💚 Corrected a number of issues presented by R CMD check such as param…

…eter names & namespace issues. Check now produces notes & warnings. Deleted unnecessary LICENCE file
ampatzia · Jul 19, 2017 · 4c86620 · 4c86620
1 parent f885903
commit 4c86620
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -4,8 +4,8 @@ Title: Pangenome Statistical Analysis for R
 Version: 0.0.9
 Author: Stelios Batziakas
 Maintainer: Stelios Batziakas <ampatziakas@gmail.com>
-Description: A package that reads genome clustering results and allows
-    their statistical analysis 
+Description: Functions to read genome clustering results and allows
+    their statistical analysis in the context of a pangenomic analysis. 
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
@@ -16,7 +16,10 @@ Depends:
     stringr,
     readr,
     fpc,
-    micropan    
+    micropan
+Imports: magrittr,
+         ggplot2,
+         dplyr
 RoxygenNote: 6.0.1
 Suggests: knitr,
     rmarkdown

diff --git a/LICENSE b/LICENSE
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,2 +1,22 @@
-exportPattern("^[[:alpha:]]+")
-importFrom("stats")
+# Generated by roxygen2: do not edit by hand
+
+export(cluster_number)
+export(cp_plot)
+export(gp_plot)
+export(grid_plot)
+export(make_panmatrix)
+export(make_panmatrix_fami)
+export(make_panmatrix_fami2)
+export(mg_plot)
+export(org_names)
+export(org_names_fami2)
+export(organism_names_panmatrix_fami)
+export(panm_summary)
+export(pm_binom)
+export(pm_chao)
+export(pm_cluster)
+export(pm_fluidity)
+export(pm_fluidity_all)
+export(pm_heaps)
+export(pm_plot)
+importFrom(magrittr,"%>%")