Skip to content
@andersen-lab

Andersen Laboratory @ Scripps Research

Pinned Loading

  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    15 4

  2. west-nile-genomics-wnv4k west-nile-genomics-wnv4k Public

    West Nile virus genomic data produced as part of the WestNile 4K Project

    1 3

  3. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 115 39

  4. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 101 29

  5. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Shell 24 5

Repositories

Showing 10 of 52 repositories
  • Freyja-SRA Public
    andersen-lab/Freyja-SRA’s past year of commit activity
    Python 3 GPL-3.0 1 0 0 Updated Sep 22, 2024
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 101 BSD-2-Clause 29 5 0 Updated Sep 22, 2024
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 4 0 0 0 Updated Sep 22, 2024
  • lone_pine Public

    Sequencing dashboard for San Diego County

    andersen-lab/lone_pine’s past year of commit activity
    Jupyter Notebook 0 1 1 1 Updated Sep 21, 2024
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 12 2 0 0 Updated Sep 17, 2024
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Shell 24 5 1 0 Updated Sep 16, 2024
  • MixAmp Public

    Amplicon read simulator

    andersen-lab/MixAmp’s past year of commit activity
    Python 1 0 0 0 Updated Sep 12, 2024
  • Freyja-barcodes Public
    andersen-lab/Freyja-barcodes’s past year of commit activity
    HTML 3 BSD-2-Clause 0 2 0 Updated Sep 12, 2024
  • HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    andersen-lab/HCoV-19-Genomics’s past year of commit activity
    15 4 2 0 Updated Sep 9, 2024
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 115 GPL-3.0 41 43 9 Updated Sep 4, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…