Qiime2 2023.2 #102
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Qiime2 2023.2 #102
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…classifier params. New muscle v5, updated partameters
Also changed muscle to muscle5, and added `--cores 4` to snakemake examples as that is now required when running snakemake.
Added updated silva links
Added M1 chip install instructions
Added feature-table filter-samples to rule filter_sequences_table. Can filter by sample name or metadata.
Added new rule export_taxa_biom to collapse features by taxonomy at a user defined taxonomic level, then convert to biom and convert tsv. Intermediate files are removed.
Testing commits directly to the qiime2-2023.2 branch
Addressing Issue 91
lukenoaa
approved these changes
Jun 22, 2023
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Request to update Tourmaline to be compatible with qiime2-2023.2 Conda environment. Also includes some enhancements from existing Issues.