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davebx

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Commits on Nov 15, 2019

• Correct additional parameters, update test data.

  davebx

  committedNov 15, 2019
  937fa21

• Remove stray references to common parameters

  davebx

  committedNov 15, 2019
  003ba6c

• Update wrapper version in the correct place.

  davebx

  committedNov 15, 2019
  5dd5295

• Update parameters for version 4.1.4.0

  davebx

  committedNov 15, 2019
  222eb3c

Commits on Nov 6, 2019

• Update test-6 output file.

  davebx

  committedNov 6, 2019
  735fe14

Commits on Nov 1, 2019

• Add tests for new parameters, update test data.

  davebx

  committedNov 1, 2019
  f661190

Commits on Oct 30, 2019

• Merge branch 'master' of https://github.com/galaxyproject/tools-iuc into refreebayes

  davebx

  committedOct 30, 2019
  d100925

Commits on Oct 29, 2019

• Additional updates

  davebx

  committedOct 29, 2019
  b17fab1

Commits on Oct 28, 2019

• Address feedback from John and Björn.

  davebx

  committedOct 28, 2019
  c40ec7e

Commits on Oct 25, 2019

• Add wrapper for Mutect2 from the GATK4 suite.

  davebx

  committedOct 25, 2019
  0016383

Commits on Sep 25, 2019

• - Update kallisto dependency to 0.46.0

  davebx

  committedSep 25, 2019
  bc130bd

• Fix kallisto_pseudo

  davebx

  committedSep 25, 2019
  37b37cb

Commits on Sep 3, 2019

• Wrapper for telescope version 1.0.3 (galaxyproject#2564)

  

  davebx

  authored and

  bgruening

  committedSep 3, 2019
  2ad2972

Commits on Aug 22, 2019

• Remove superfluous second test.

  davebx

  committedAug 22, 2019
  00de5c5

• Use asserts for testing, as output varies.

  davebx

  committedAug 22, 2019
  3dce521

Commits on Aug 20, 2019

• Clean up command block, add minimum values, remove superfluous parameters.

  davebx

  committedAug 20, 2019
  b56b470

• Wrapper for pipelign version 0.2

  davebx

  committedAug 20, 2019
  87a39b2

Commits on Aug 19, 2019

• Use relative paths for input files.

  davebx

  committedAug 19, 2019
  81387cc

• Merge branch 'hyphy_tools' of ssh://github.com/veg/tools-iuc into hyphy_update

  davebx

  committedAug 19, 2019
  a181f37

• Updates per Björn's review

  davebx

  committedAug 19, 2019
  049b91e

Commits on Aug 15, 2019

• Trim test data to shorten tests.

  davebx

  committedAug 15, 2019
  e44ec01

• Merge branch 'master' of https://github.com/galaxyproject/tools-iuc into hyphy_update

  davebx

  committedAug 15, 2019
  ab07a7a

Commits on Aug 14, 2019

• Update indentation to IUC preference.

  davebx

  committedAug 14, 2019
  0c7efad

Commits on Aug 5, 2019

• Relocate coverage options, update test data.

  davebx

  committedAug 5, 2019
  04f89f0

• Put coverage options in their own section.

  davebx

  committedAug 5, 2019
  bb886e6

Commits on Aug 2, 2019

• Update defaults in xml to batch built-in defaults.

  davebx

  committedAug 2, 2019
  c44e783

• Updates per pull request comments

  davebx

  committedAug 2, 2019
  7967bee

• Update FreeBayes to version 1.3.1

  davebx

  committedAug 2, 2019
  7c91103

• Update freebayes to 1.3.1

  davebx

  committedAug 2, 2019
  c640a89

Commits on Jul 18, 2019

• Put dependency version and citation in a macro.

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  959f4e7

• Update per reviews

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  2684b0b

• Note to self: change tool ID before commit.

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  722119c

• Add a wrapper for the readreduce command.

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  ca43fd6

• Fix optional parameter to actually be optional.

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  089eb5d

• Fix category in .shed.yml

  

  davebx

  authored and

  nsoranzo

  committedJul 18, 2019
  f0dba4f

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