Nucleic acid strand displacement compiler

domain-level nucleic acid reaction enumeration

Interactive visualization of cotranscriptional folding

Programmatically generate SVG (vector) images, animations, and interactive Jupyter widgets

Smarkets fork of a port of Andy Wingo's statprof.py to newer python by Alex Fraser

Python utilities for SBML

Package for simulating and displaying chemical reaction networks (CRNs) on a surface.

Kinetic DNA strand displacement analyzer

A computer algebra system written in pure Python

An RNA manipulation library.

Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process

Additional Perl modules living in the namespace RNA. They augment the Perl 5 wrapped libRNA C-library of the ViennaRNA Package and are usually included in the ViennaRNA Package distribution.

Compute local minima and energy barriers of a landscape

The ViennaRNA Package

Create force-directed graphs of RNA secondary structures.

Statistical data visualization in Python

A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis