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Allen Institute
- Seattle, WA
- https://bdpedigo.github.io/
- @bpedigod
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skedits Public
Examining the effect of proofreading on inferences in connectomics
Python MIT License UpdatedJul 23, 2024 -
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microns_tutorial Public
Forked from AllenInstitute/microns_tutorialMICrONS databook and analysis tutorials
Jupyter Notebook UpdatedJul 9, 2024 -
lamination-evaluation Public
Analyzing the results of the 2024 "Best Croissant in Seattle" tournament from the Allen Institute Electron Microscopy Connectomics team
HTML MIT License UpdatedJun 12, 2024 -
networkframe Public
Lightweight representations of networks using Pandas DataFrames
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pcg_skel Public
Forked from CAVEconnectome/pcg_skelRobust skeletonization of PyChunkedGraph-backed objects
Python Other UpdatedMay 17, 2024 -
cookiecutter-pypackage Public
Forked from waynerv/cookiecutter-pypackageA tool for creating skeleton python projects
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PyChunkedGraph Public
Forked from CAVEconnectome/PyChunkedGraphChunked graph structure used for human proof-reading in Python
Python Mozilla Public License 2.0 UpdatedMar 28, 2024 -
quarto-web Public
Forked from quarto-dev/quarto-webQuarto website
JavaScript Other UpdatedMar 25, 2024 -
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ImageryClient Public
Forked from CAVEconnectome/ImageryClientPublication-ready visualization of overlays of imagery and segmentation from cloudvolume data
Python MIT License UpdatedMar 6, 2024 -
skedits-app Public
Tools for orchestrating skeleton analysis in cloud infrastructure
Shell UpdatedFeb 16, 2024 -
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cloud-workflow-mwe Public
Minimal working example for cloud workflow using CAVE, Amazon SQS, Google Cloud Storage, etc.
UpdatedJan 23, 2024 -
cave-ecosystem Public
Mapping packages and services in the CAVE ecosystem
MIT License UpdatedJan 19, 2024 -
skervice Public
Skeletonization service for the CAVE ecosystem
Python MIT License UpdatedJan 9, 2024 -
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PCGL2Cache Public
Forked from CAVEconnectome/PCGL2CacheLevel 2 caching system for the PyChunkedGraph
Python GNU General Public License v3.0 UpdatedNov 16, 2023 -
apical_classifier Public
Forked from ceesem/apical_classifierTools for training and applying an apical classifier on skeleton data from the chunkedgraph
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 7, 2023 -
axon_id Public
Forked from AllenInstitute/axon_idTools used in identifying the axons and dendrites of neurons
Python UpdatedNov 6, 2023 -
neuropull Public
A (soon to be) lightweight Python package for accessing single-cell connectome networks with metadata.
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networks-course Public
A short course on network data science at Johns Hopkins University
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skeleton_plot Public
Forked from AllenInstitute/skeleton_plottools for plotting swc and meshparty skeletons
Jupyter Notebook UpdatedOct 4, 2023