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A curated list of resources for medical data harmonization algorithms

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Harmonization Algorithms for Medical Data Pooling

A curated list of resources including papers, data modality, and code pertaining to medical data harmonization.

Last updated: 03/07/2022

Date Title Modality Venue Code
11/2017 Harmonization of Multi-Site Diffusion Tensor Imaging Data DTI NeuroImage R, Python
02/2018 Harmonization of Cortical Thickness Measurements across Scanners and Sites MRI NeuroImage R, Python
07/2018 Statistical Harmonization Corrects Site Effects in Functional Connectivity Measurements from Multi-site fMRI Data fMRI HBM MATLAB
01/2019 Retrospective Harmonization of Multi-site Diffusion MRI Data Acquired with Different Acquisition Parameters dMRI NeuroImage Python
12/2019 DeepHarmony: A Deep Learning Approach to Contrast Harmonization across Scanner Changes MRI MRI -
03/2020 Harmonization of Large MRI Datasets for The Analysis of Brain Imaging Patterns Throughout The Lifespan MRI NeuroImage Python
04/2020 Scanner Invariant Representations for Diffusion MRI Harmonization dMRI MRM PyTorch
10/2020 Longitudinal ComBat: A Method for Harmonizing Longitudinal Multi-scanner Imaging Data MRI NeuroImage R
09/2020 Image-Level Harmonization of Multi-site Data Using Image-and-Spatial Transformer Networks MRI MICCAI PyTorch
01/2021 Detect and Correct Bias in Multi-site Neuroimaging Datasets MRI MedIA R
09/2021 Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors MRI JMRI -
09/2021 Harmonization with Flow-Based Causal Inference MRI MICCAI PyTorch
11/2021 Unsupervised MR Harmonization by Learning Disentangled Representations Using Information Bottleneck Theory MRI NeuroImage -
12/2021 Mitigating Site Effects in Covariance for Machine Learning in Neuroimaging Data MRI HBM R
03/2022 Privacy-preserving Harmonization via Distributed ComBat MRI NeuroImage R

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