fix: finish migrating from setup.cfg to pyproject.toml in order to install seqrepo cli

[reece]

See #138 for explanation.

@biocommons/maintainers : To test, please pull this branch and make devready then try seqrepo. If that works, I think we're good to go.

[korikuzma]

I'm having trouble running make devready on a Mac:

make venv && source venv/bin/activate && make develop
/bin/bash: line 0: globstar: invalid shell option name
make: *** [devready] Error 2

Changing: SHELL:=/bin/bash -e -o pipefail -O globstar to SHELL:=/bin/bash -e -o pipefail gets make devready to work.

I then run source venv/bin/activate. After running seqrepo, I get:

Traceback (most recent call last):
  File "/Users/kxk102/Documents/biocommons/biocommons.seqrepo/venv/bin/seqrepo", line 5, in <module>
    from biocommons.seqrepo.cli import main
  File "/Users/kxk102/Documents/biocommons/biocommons.seqrepo/src/biocommons/seqrepo/cli.py", line 34, in <module>
    import tqdm
ModuleNotFoundError: No module named 'tqdm'

We'll want to update the develop in Makefile to pip install -e .[dev,docs,loading].

After these changes, I can successfully run seqrepo.

[reece]

I removed the loading optional deps (it was new) and put its deps in dev.

I also added instructions for Mac OSX, which includes installing bash. (Although the makefile appeared to work for you, the clean targets that use globstar would fail. globstar needs to stay.

@korikuzma Would you please try again?

[korikuzma]

Can confirm those changes work! Thanks @reece