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Build vcftools for osx-arm64 #49102

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merged 4 commits into from
Jul 11, 2024
Merged

Build vcftools for osx-arm64 #49102

merged 4 commits into from
Jul 11, 2024

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corneliusroemer
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@corneliusroemer corneliusroemer commented Jul 10, 2024 •
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@corneliusroemer corneliusroemer added the osx-arm64 Related to adding osx-arm64 support label Jul 10, 2024
@corneliusroemer corneliusroemer mentioned this pull request Jul 10, 2024
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@corneliusroemer corneliusroemer enabled auto-merge (squash) July 11, 2024 15:12
@corneliusroemer corneliusroemer added please review & merge set to ask for merge and removed help wanted labels Jul 11, 2024
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@BiocondaBot please fetch artifacts

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Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 vcftools-0.1.16-pl5321hdcf5f25_11.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64 vcftools-0.1.16-pl5321h447d7a5_11.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-arm64 vcftools-0.1.16-pl5321h6057758_11.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/ba847516-3efa-4e7a-8c5e-c76c2e7c0200/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 vcftools-0.1.16-pl5321h7f4e536_11.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/6eadca16-b2f0-446a-944c-380bc78f62af/artifacts/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
vcftools 0.1.16--pl5321hdcf5f25_11 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/vcftools:0.1.16--pl5321hdcf5f25_11.tar.gz | docker load

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Downloaded arm build and tested. Works!

aliciaaevans
aliciaaevans approved these changes Jul 11, 2024
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Thanks, glad it was figured out!

@corneliusroemer corneliusroemer merged commit 4f50c88 into master Jul 11, 2024
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@corneliusroemer corneliusroemer deleted the vcftools branch July 11, 2024 16:13
tcezard pushed a commit to tcezard/bioconda-recipes that referenced this pull request Sep 12, 2024
@corneliusroemer @milot-mirdita @tcezard
Build vcftools for osx-arm64 (bioconda#49102)
5c9dea2 
* Build vcftools for osx-arm64

* Try C++11

* Reorder compiler to be first

* Try explicit path to m4

Big thanks to Milot Mirdita for figuring this out!

---------

Co-authored-by: Milot Mirdita <milot@mirdita.de>
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@aliciaaevans aliciaaevans aliciaaevans approved these changes

@martin-g martin-g Awaiting requested review from martin-g

@milot-mirdita milot-mirdita Awaiting requested review from milot-mirdita

@jmarshall jmarshall Awaiting requested review from jmarshall

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