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Update goleft recipe to include samtools as a run requirement #5330

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merged 2 commits into from
Jul 24, 2017

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armish
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@armish armish commented Jul 24, 2017

This is specifically for goleft depth that parallelizes samtools calls. samtools is not a monstrous dependency to have so better include it rather than forcing user to install it upon depth subcommand failures (cc: @brentp)

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

This is specifically for `goleft depth` that parallelizes `samtools` calls. `samtools` is not a monstrous dependency to have so better include it rather than forcing user to install it upon `depth` subcommand failures.
@bgruening
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@armish can you please bump the build number? Otherwise you will not get a new package.

@daler
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daler commented Jul 24, 2017

Thanks @armish!

@daler daler merged commit ff398b6 into bioconda:master Jul 24, 2017
lparsons pushed a commit to lparsons/bioconda-recipes that referenced this pull request Aug 7, 2017
…da#5330)

* update goleft recipe to include samtools as a run requirement

This is specifically for `goleft depth` that parallelizes `samtools` calls. `samtools` is not a monstrous dependency to have so better include it rather than forcing user to install it upon `depth` subcommand failures.

* bump build number to update goleft package with the new dependency
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3 participants