Skip to content
@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

Pinned Loading

  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 86 19

  2. blotter blotter Public

    bedford lab research

    HTML 66 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 21

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 99 repositories
  • cartography Public

    Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2

    blab/cartography’s past year of commit activity
    HTML 3 MIT 1 20 2 Updated Jul 3, 2024
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 66 93 3 1 Updated Jul 3, 2024
  • pathogen-embed Public

    Create reduced dimension embeddings for pathogen sequences

    blab/pathogen-embed’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Jul 2, 2024
  • cholera Public
    blab/cholera’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 28, 2024
  • mers-evolution Public
    blab/mers-evolution’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 26, 2024
  • mers_skyline Public

    analysis of updated MERS data via approximate structured coalescent approaches

    blab/mers_skyline’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 26, 2024
  • phylo-kernel-public Public

    Code and data for: "Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences".

    blab/phylo-kernel-public’s past year of commit activity
    R 0 0 0 0 Updated Jun 24, 2024
  • vscode-guide Public template

    A guide on practical uses for the popular text editor by members of the Bedford Lab

    blab/vscode-guide’s past year of commit activity
    0 0 0 0 Updated Jun 18, 2024
  • sars2-within-host-selection Public

    Correlating within-host and between-host fitness in SARS-CoV-2

    blab/sars2-within-host-selection’s past year of commit activity
    HTML 1 0 0 0 Updated Jun 4, 2024
  • evofr Public

    Tools for evolutionary forecasting

    blab/evofr’s past year of commit activity
    Jupyter Notebook 2 AGPL-3.0 0 2 0 Updated Jun 3, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…