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Report Modules: panoply_immune_analysis_report
Karen edited this page Nov 18, 2020
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This module creates an interactive R Markdown report of the panoply_immune_analysis module. xCell scores are shown in an annotated heatmap and compared to ESTIMATE scores in interactive scatter plots. Significant (defined by FDR value given in panoply_immune_analysis
) results, if any, of enrichment analysis using Fisher's exact test between immune subtypes and annotation groups are shown in an interactive table.
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tar_file
: (.tar
file) output tar file containing results frompanoply_immune_analysis
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yaml_file
: (.yaml
file) master parameters file -
label
: (String) directory name within the tar file
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report
: (.html
file) Interactive R Markown report.
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