Regions of excessive sequencing depth

Please use the UCSC table browser to retrieve the Top 0.01 frequency Hi Seq Depth dataset:

Use bedTools to merge all regions within 1kb, then exclude those overlapping with coding exons.

If the extreme depth track is unavailable it can be generated using the detectExtremeDepth utility from cgpBigWig. Please read the relavant page from the PCAP-core documentation for more detailed instructions.