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Reference Data Generation

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AndyMenzies edited this page Apr 6, 2018 · 8 revisions

This page details the generation of the cache files VAGrENT uses to speed up annotation processing, this was written in relation to release v3.3.2

These comprise of the cache file itself which contains the indexable transcript and exon coordinate data and meta data, and a fasta file of the transcript sequences.

There are 3 generation scripts, and one summerisation script.

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