small fixes examples

chrisgorgo · May 23, 2016 · bcd8b83 · bcd8b83
1 parent 4368032
commit bcd8b83
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Showing 3 changed files with 14 additions and 2 deletions.
diff --git a/examples/01_plotting/plot_demo_glass_brain.py b/examples/01_plotting/plot_demo_glass_brain.py
@@ -29,7 +29,7 @@
     localizer_tmap_filename, title='plot_glass_brain',
     black_bg=True, display_mode='xz', threshold=3)
 
-plotting.show()
+# plotting.show()
 
 ###############################################################################
 # Hemispheric sagittal cuts

diff --git a/examples/01_plotting/plot_demo_glass_brain_extensive.py b/examples/01_plotting/plot_demo_glass_brain_extensive.py
@@ -19,7 +19,7 @@
 localizer_tmap_filename = localizer_dataset.tmaps[1]
 
 ###############################################################################
-# demo glass brain plotting
+# demo glass brain plotting.
 from nilearn import plotting
 
 # Whole brain saggital cuts
@@ -36,6 +36,9 @@
 plotting.plot_glass_brain(localizer_tmap_filename, threshold=3,
                           colorbar=True, plot_abs=False)
 
+plotting.show()
+
+###############################################################################
 # Hemispheric saggital cuts
 plotting.plot_glass_brain(localizer_tmap_filename, threshold=3,
                           display_mode='lyrz')

diff --git a/examples/03_connectivity/plot_connectivity_measures.py b/examples/03_connectivity/plot_connectivity_measures.py
@@ -97,3 +97,12 @@
 plt.grid(True)
 plt.tight_layout()
 plt.show()
+
+
+######################################################################
+# Plot the mean connectome with hemispheric saggital cuts
+for kind in kinds:
+    nilearn.plotting.plot_connectome(mean_connectivity_matrix[kind],
+                                     region_coords, edge_threshold='98%',
+                                     title=kind, display_mode='lzry')
+plt.show()