This is the supplementary code for fast-reconstruction and optical-sectioning three dimensional illumination microscopy.

A GUI tool for estimation the quality of expansion microscopy experiment

A Matlab package for segmentation of filament and the orientation.

Denoising with Weak Signal Enhancement for Structured Illumination Microscopy

Command-line tool and supplementary material in regards to the paper: "Fiduciary-free frame alignment for robust time-lapse drift correction estimation in multi-sample cell microscopy"

🚀⏱️ Neural space-time model for dynamic scene modeling and image reconstruction

EVE: an open modular data analysis software for event-based localization microscopy as published in https://doi.org/10.1101/2024.08.09.607224

ONE Microscopy is a Java-written software that utilizes Fiji app to resolve images at one nanoscale

Computational workflows to assess phototoxicity in live-cell microscopy experiments

DeBCR for microscopy Denoising/Deblurring/Deconvolution

Loading and handling microscopy data in blender

ImageJ plugin

Adaptive Intersection Maximization (AIM) is a high-speed drift correction lgorithm for single molecule localization microscopy.

An intelligent command line interface for ChimeraX

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

cuCIM - RAPIDS GPU-accelerated image processing library

Deconvolution of widefield microscopy images and generation of point spread functions

a new version of DeepSTORM3D with some user-friendly adjustments and large-FOV implementation

add field dependence to enable large-FOV imaging

Launch Programs 𝙔𝙤𝙪𝙧 Way! 🍔

Official PyTorch implementation of the "SN2N" -v0.3.5

Accurate and efficient spot detection for microscopy data