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CDN sync setup outdated for Bioconda #950

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2 tasks done
mbargull opened this issue Jun 2, 2024 · 3 comments
Open
2 tasks done

CDN sync setup outdated for Bioconda #950

mbargull opened this issue Jun 2, 2024 · 3 comments
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type::bug describes erroneous operation, use severity::* to classify the type

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@mbargull
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mbargull commented Jun 2, 2024

Checklist

  • I added a descriptive title
  • I searched open reports and couldn't find a duplicate

What happened?

It looks like the CDN sync for bioconda uses a pretty outdated setup:

  1. https://conda.anaconda.org/bioconda/rss.xml is still the old cut-off-XML <item><title>...</title><pubDate>...</pubDate></item> format.
  2. https://conda.anaconda.org/bioconda/noarch/repodata.json.zst is not being generated.
  3. https://anaconda.org/bioconda/bioconda-utils/3.2.0/download/noarch/bioconda-utils-3.2.0-pyh7cba7a3_0.conda is not being sync'd.

I wanted us to finally start using .conda packages, hence the last point is the most pressing issue.

What can I do to expedite the CDN sync setup update for bioconda?


This is really a dupe of gh-866 and probably just needs the same handling as nvidia: #945 .
I'm no fan of opening duplicate issues, but doing this for visibility in due to #866 (comment) .

Conda Info

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Conda Config

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Conda list

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Additional Context

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@mbargull mbargull added the type::bug describes erroneous operation, use severity::* to classify the type label Jun 2, 2024
mbargull added a commit to bioconda/bioconda-common that referenced this issue Jun 2, 2024
refs:
- conda/infrastructure#950

Signed-off-by: Marcel Bargull <marcel.bargull@udo.edu>
@jezdez
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jezdez commented Jun 3, 2024

Thanks for opening this ticket, I concur this should be improved. CCing @chenghlee.

@morremeyer
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@mbargull With the migration to the new cloning infrastructure, number 2 and 3 should be resolved.

Can you verify this from your side?

@dholth
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dholth commented Sep 16, 2024

Do you mean the old cut off RSS was improperly formed?

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Labels
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