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University Goettingen
- Goettingen, Germany
- https://user.informatik.uni-goettingen.de/~pape41/
- @cppape
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torch-em Public
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
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z5 Public
Lightweight C++ and Python interface for datasets in zarr and N5 format
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nifty Public
Forked from DerThorsten/niftynifty cPP and Python
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elf Public
Utils and convenience functions for large-scale bio-image analysis.
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torch_em-feedstock Public
Forked from conda-forge/torch_em-feedstockA conda-smithy repository for torch_em.
BSD 3-Clause "New" or "Revised" License UpdatedJul 15, 2024 -
cluster_tools Public
Distributed segmentation for bio-image-analysis
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CellSeg3D Public
Forked from AdaptiveMotorControlLab/CellSeg3DA napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
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micro_sam-feedstock Public
Forked from conda-forge/micro_sam-feedstockA conda-smithy repository for micro_sam.
BSD 3-Clause "New" or "Revised" License UpdatedMay 24, 2024 -
synaptic-reconstruction Public
Forked from computational-cell-analytics/synaptic-reconstructionReconstruction of synaptic structures in electron microscopy
Python MIT License UpdatedMay 22, 2024 -
03_learned_representations Public
Forked from dl4mia/03_learned_representationsAn execise for using features extracted from a vision transformer for downstream tasks
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 9, 2024 -
python-elf-feedstock Public
Forked from conda-forge/python-elf-feedstockA conda-smithy repository for python-elf.
BSD 3-Clause "New" or "Revised" License UpdatedMay 5, 2024 -
micro-sam Public
Forked from computational-cell-analytics/micro-samSegment Anything for Microscopy
Jupyter Notebook MIT License UpdatedApr 30, 2024 -
mobie_utils-feedstock Public
Forked from conda-forge/mobie_utils-feedstockA conda-smithy repository for mobie_utils.
BSD 3-Clause "New" or "Revised" License UpdatedFeb 20, 2024 -
computational-cell-analytics-home Public
Forked from mavroudisv/plain-academicA truly simple website template for academics
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docs Public
Forked from napari/docsDocumentation for napari (other than API docs)
Makefile BSD 3-Clause "New" or "Revised" License UpdatedJan 12, 2024 -
SuperHuman Public
Forked from weih527/SuperHumanSuperhuman accuracy on the SNEMI3D connectomics challenge
Python UpdatedJan 9, 2024 -
napari Public
Forked from napari/naparinapari: a Qt- and VisPy-based ndarray visualization tool
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 19, 2023 -
pybdv Public
python tools for BigDataViewer
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pybdv-feedstock Public
Forked from conda-forge/pybdv-feedstockA conda-smithy repository for pybdv.
BSD 3-Clause "New" or "Revised" License UpdatedMay 23, 2023 -
deep-micro-val Public
Evaluating segmentation methods for common cell segmentation problems
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mobie-python-examples Public
Forked from CamachoDejay/mobie-python-examplesJupyter Notebook GNU General Public License v3.0 UpdatedMar 7, 2023 -
napari-skimage-regionprops Public
Forked from haesleinhuepf/napari-skimage-regionpropsFeature extraction for labeled objects in images using regionprops from scikit-image
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 17, 2022 -
stable-diffusion Public
Forked from CompVis/stable-diffusionJupyter Notebook Other UpdatedAug 31, 2022 -
dalle-mini-poster Public
Create posters from dalle-mini / craiyon screenshots
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bioimage-io-resources Public
Forked from imjoy-team/bioimage-io-resourcesModel repo for bioimage.io
Jupyter Notebook UpdatedJun 6, 2022 -
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ome-zarr-py Public
Forked from ome/ome-zarr-pyExperimental implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
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stardist Public
Forked from stardist/stardistStarDist - Object Detection with Star-convex Shapes
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 22, 2022 -