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Independent software engineer
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zarr-python Public
Forked from zarr-developers/zarr-pythonAn implementation of chunked, compressed, N-dimensional arrays for Python.
Python MIT License UpdatedJul 23, 2024 -
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pydantic-bigstitcher Public
Pydantic models for BigStitcher metadata.
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aind-exaSPIM-pipeline-utils Public
Forked from AllenNeuralDynamics/aind-exaSPIM-pipeline-utilsExaSPIM pipeline components primarily to be installed in Code Ocean capsules
Python MIT License UpdatedJul 12, 2024 -
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Bikeshed Other UpdatedJun 27, 2024 -
neuroglancer Public
Forked from google/neuroglancerWebGL-based viewer for volumetric data
TypeScript Apache License 2.0 UpdatedJun 26, 2024 -
zarr-specs Public
Forked from zarr-developers/zarr-specsZarr core protocol for storage and retrieval of N-dimensional typed arrays
Other UpdatedJun 13, 2024 -
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n5 Public
Forked from saalfeldlab/n5Not HDF5
Java BSD 2-Clause "Simplified" License UpdatedMay 6, 2024 -
dacapo Public
Forked from janelia-cellmap/dacapoA framework for easy application of established machine learning techniques on large, multi-dimensional images.
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 15, 2024 -
zeps Public
Forked from zarr-developers/zepsZarr Enhancement Proposals
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funlib.persistence Public
Forked from funkelab/funlib.persistenceInterfaces for data (arrays and graphs) and storage formats (databases and file formats)
Python MIT License UpdatedJan 30, 2024 -
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tutorial Public
Forked from scipy-2023-image-analysis/tutorialPython BSD 3-Clause "New" or "Revised" License UpdatedJul 1, 2023 -
fibsem-tools Public
Forked from janelia-cellmap/fibsem-toolsTools for handling FIB-SEM data and annotations
Python MIT License UpdatedApr 18, 2023 -
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filesystem_spec Public
Forked from fsspec/filesystem_specA specification that python filesystems should adhere to.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 31, 2023 -
fibsem-metadata Public
Forked from janelia-cellmap/fibsem-metadataHuman-readable descriptions of our datasets
Python UpdatedAug 16, 2022 -
Parallel computing with task scheduling
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 14, 2022 -
xpublish Public
Forked from xpublish-community/xpublishPublish Xarray Datasets via a REST API.
Python MIT License UpdatedJul 11, 2022 -
numcodecs Public
Forked from zarr-developers/numcodecsA Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
Python MIT License UpdatedJul 6, 2022 -
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dask-jobqueue Public
Forked from dask/dask-jobqueueDeploy Dask on job schedulers like PBS, SLURM, and SGE
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 18, 2022 -
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unityvr Public
Forked from hjmh/unityvrTools for analyzing data collected with a custom unity-based VR for insects.
Jupyter Notebook UpdatedJul 14, 2021