Tags: daisyyr/cellphonedb
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Fix requirements (Teichlab#284) * Fix pandas dependency, pinned to `pandas>=1.0.0,<=1.1.4` to prevent 'pandas.errors.InvalidIndexError: Reindexing only valid with uniquely valued Index objects'. * Add min version for numpy<=1.16.5 to match pandas requirement. * Remove unused cython requirement. * Add README.md and requirements.txt to package MANIFEST.in * Bump package version and add short description to setup.py
Allow .h5ad, .h5 and mtx as input and fix requirements (Teichlab#264) * Update utils.py to include `_read_mtx`, `_read_h5ad` and `_read_h5` * Update `method_launcher.py` * Update `cpdb_statistical_analysis_helper.py` and `cpdb_statistical_analysis_complex_method.py` * Requirements: drop pandas versions (fix compatibility with python versions); add numpy, h5py and anndata; for now scikit-learn (geosketch dependency); remains fixed at 0.22 until further testing of geosketch v1.2 * Update `requirements.txt` and `win-requirements.txt` and make `setup.py` pickup requirements from requirements.txt Co-authored-by: @prete
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