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|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| categories: | ||
| - Text Manipulation | ||
| description: Calculate a numeric parameter value using integer and float values. | ||
| homepage_url: | ||
| long_description: | | ||
| This tool can be used in workflows to calculate a numeric parameter from multiple individual | ||
| parameters together with simple arithmetic operations. | ||
| name: calculate_numeric_param | ||
| owner: iuc | ||
| remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/calculate_numeric_param | ||
| type: unrestricted |
134 changes: 134 additions & 0 deletions
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tools/calculate_numeric_param/calculate_numeric_param.xml
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| <tool name="Calculate numeric parameter value" id="calculate_numeric_param" version="0.1.0" profile="19.05" tool_type="expression"> | ||
| <description>from parameters</description> | ||
| <expression type="ecma5.1"> | ||
| { | ||
| let s = ""; | ||
| for (const repeat of $job.components) { | ||
| s += repeat.param_type.component_value | ||
| s += repeat.arith | ||
| if (repeat.arith == "") { | ||
| break; | ||
| } | ||
| }; | ||
| let e; | ||
| if ($job.output_type == "integer") { | ||
| e = parseInt(eval(s)); | ||
| } else { | ||
| e = eval(s); | ||
| } | ||
| return {'output': e}; | ||
| } | ||
| </expression> | ||
| <inputs> | ||
| <repeat name="components" min="2"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" type="select" label="Choose the type of parameter for this field"> | ||
| <option value="integer">Integer Parameter</option> | ||
| <option value="float">Float Parameter</option> | ||
| </param> | ||
| <when value="integer"> | ||
| <param name="component_value" value="" type="integer" label="Enter integer for calculating the parameter"/> | ||
| </when> | ||
| <when value="float"> | ||
| <param name="component_value" value="" type="float" label="Enter float for calculating the parameter"/> | ||
| </when> | ||
| </conditional> | ||
| <param name='arith' type='select' label='Choose the arithmetic operator to apply'> | ||
| <option value="+">Addition (+)</option> | ||
| <option value="-">Subtraction (-)</option> | ||
| <option value="*">Multiplication (*)</option> | ||
| <option value="/">Division (/)</option> | ||
| <option value="**">Exponentiation (**)</option> | ||
| <option value="%">Modulus (%)</option> | ||
| <option value="">None (expression should end here)</option> | ||
| </param> | ||
| </repeat> | ||
| <param name='output_type' type='select' label='Choose whether the output should be an integer or a float.'> | ||
| <option value="integer">Integer</option> | ||
| <option value="float">Float</option> | ||
| </param> | ||
| </inputs> | ||
| <outputs> | ||
| <output type="float" name="out1" from="output"> | ||
| <filter>output_type == 'float'</filter> | ||
| </output> | ||
| <output type="integer" name="out2" from="output"> | ||
| <filter>output_type == 'integer'</filter> | ||
| </output> | ||
| </outputs> | ||
| <tests> | ||
| <test> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="integer"/> | ||
| <param name="component_value" value="1"/> | ||
| </conditional> | ||
| <param name="arith" value="+"/> | ||
| </repeat> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="integer"/> | ||
| <param name="component_value" value="1"/> | ||
| </conditional> | ||
| <param name="arith" value=""/> | ||
| </repeat> | ||
| <param name="output_type" value="integer"/> | ||
| <output name="output"> | ||
| <assert_contents> | ||
| <has_line line="2"/> | ||
| </assert_contents> | ||
| </output> | ||
| </test> | ||
| <test> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="float"/> | ||
| <param name="component_value" value="1.5"/> | ||
| </conditional> | ||
| <param name="arith" value="*"/> | ||
| </repeat> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="float"/> | ||
| <param name="component_value" value="1.5"/> | ||
| </conditional> | ||
| <param name="arith" value=""/> | ||
| </repeat> | ||
| <param name="output_type" value="float"/> | ||
| <output name="output"> | ||
| <assert_contents> | ||
| <has_line line="2.25"/> | ||
| </assert_contents> | ||
| </output> | ||
| </test> | ||
| <test> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="float"/> | ||
| <param name="component_value" value="1.5"/> | ||
| </conditional> | ||
| <param name="arith" value="*"/> | ||
| </repeat> | ||
| <repeat name="components"> | ||
| <conditional name="param_type"> | ||
| <param name="select_param_type" value="float"/> | ||
| <param name="component_value" value="1.5"/> | ||
| </conditional> | ||
| <param name="arith" value=""/> | ||
| </repeat> | ||
| <param name="output_type" value="integer"/> | ||
| <output name="output"> | ||
| <assert_contents> | ||
| <not_has_text text="2.25"/> | ||
| <has_line line="2"/> | ||
| </assert_contents> | ||
| </output> | ||
| </test> | ||
| </tests> | ||
| <help><![CDATA[ | ||
| This tool calculates an output (integer or float) parameter | ||
| from integer and float input parameters and specified simple | ||
| arithmetic operations (addition, subtraction, multiplication, | ||
| division, exponentiation, and modulus). | ||
| ]]></help> | ||
| </tool> |