SACNA is a Mathematica package developed by Daniel Fula and J. Montoya for the analysis and simulation of chemical reaction networks that exhibit chiral amplifiers, using the Collins' algorithm. The package provides 2 ways of analysis and a simulator.
- Mathematica 12
The Tutorial folder includes several Mathematica® notebooks that illustrate the usage of SACNA in different chiral chemical reaction networks. These examples represent possible results when using SACNA to analyze chiral networks:
- Calvin Model: The algorithm terminates without finding a solution, determining that the network has no chiral amplifier. (Calvin model)
- Calvin-LES Model: The algorithm finds solutions for all Routh-Hurwitz conditions. (Calvin-LES model)
- Hochberg-Ribo Model: The algorithm finds solutions for one of the Routh-Hurwitz conditions. (Hochberg-Ribo replicator model)
- APED Model: The entered network is too complex, making most of the Routh-Hurwitz conditions impossible to analyze or have no short-term solutions. (APED model)
- APED-reversible Model: The entered network is too complex, making all Routh-Hurwitz conditions impossible to analyze or have no short-term solutions. (APED reversible model)
Please note that the examples are located in the Tutorial folder and are accompanied by their respective PDF files with explanations of the package usage.
This code is released under Apache 2.0