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BND
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@tobiasrausch
tobiasrausch committed Mar 1, 2024
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# Convert Delly inter-chromosomal translocations into breakend format with multiple records

`python3 delly2bnd.py -v delly.bcf -r ref.fa -o out.vcf`
`python delly2bnd.py -v delly.bcf -r ref.fa -o out.vcf`

`bcftools sort -O b -o bnd.bcf out.vcf`

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