don't get DUP'ed or DEL'ed by your putative SVs.

Conda recipes for the bioconda channel.

Website to analyze conflicting assertions in ClinVar

An index of all our open-source data, analysis, libraries, tools, and guides.

Data and code behind the articles and graphics at FiveThirtyEight

Data Apps & Dashboards for Python. No JavaScript Required.

A Python scikit for building and analyzing recommender systems

Amplicon Indel Hunter (AIH) is a large (>5-bp) indel detection method that is reference genome independent and highly sensitive for the identification of somatic indels in amplicon-based, paired-en…

GenomicsDB

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for…

Declarative statistical visualization library for Python

Screaming-fast Python 3.5+ HTTP toolkit integrated with pipelining HTTP server based on uvloop and picohttpparser.

Reference data: BED files, genes, transcripts, variations.

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient

Applied Computational Genomics Course at UU: Spring 2020

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

a cythonized, extended version of the interval search tree in bx

inheritance models for mendelian diseases

prioritize effects of variant annotations from VEP, SnpEff, et al.

a pileup library that embraces the huge

sequence alignment. global, local, glocal.

An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data

A Tool to Annotate and Prioritize Exome Variants

Turn your two-bit doodles into fine artworks with deep neural networks, generate seamless textures from photos, transfer style from one image to another, perform example-based upscaling, but wait..…

Scripts for btrfs maintenance tasks like periodic scrub, balance, trim or defrag on selected mountpoints or directories.

The Deserts of the West - a 2015 NaNoGenMo entry

A generator for naming languages

Fantasy map generator

RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data

Genome-wide assessment of differential translations with ribosome profiling data