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metal-site-prediction Public
Forked from lcbc-epfl/metal-site-predictionJupyter Notebook UpdatedJun 25, 2024 -
DiffSBDD Public
Forked from arneschneuing/DiffSBDDA Euclidean diffusion model for structure-based drug design.
Python MIT License UpdatedJun 19, 2024 -
NeuralPLexer Public
Forked from zrqiao/NeuralPLexerNeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
Jupyter Notebook BSD 3-Clause Clear License UpdatedJun 10, 2024 -
SiamDiff Public
Forked from DeepGraphLearning/SiamDiffCode for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Python UpdatedJun 6, 2024 -
targetdiff Public
Forked from guanjq/targetdiffThe official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)
Python UpdatedJan 10, 2024 -
ngboost Public
Forked from stanfordmlgroup/ngboostNatural Gradient Boosting for Probabilistic Prediction
Python Apache License 2.0 UpdatedNov 28, 2023 -
m-ionic Public
Forked from TeamSundar/m-ionicProtein-metal ion interaction modeling
Jupyter Notebook UpdatedSep 22, 2023 -
gradient-boosting-survival-embeddings Public
Forked from loft-br/xgboost-survival-embeddingsImproving gradient boosting survival analysis with embeddings and debiased estimators
Python Apache License 2.0 UpdatedAug 23, 2023 -
CryoEM Public
Forked from Structurebiology-BNL/CryoFEMDeep learning based cryoEM density map enhancement
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esm Public
Forked from facebookresearch/esmEvolutionary Scale Modeling (esm): Pretrained language models for proteins
Python MIT License UpdatedAug 3, 2023 -
OmegaFold Public
Forked from HeliXonProtein/OmegaFoldOmegaFold Release Code
Python Apache License 2.0 UpdatedJul 12, 2023 -
openfold Public
Forked from aqlaboratory/openfoldTrainable PyTorch reproduction of AlphaFold 2
Python Apache License 2.0 UpdatedJul 3, 2023 -
GeoLDM Public
Forked from MinkaiXu/GeoLDMGeometric Latent Diffusion Models for 3D Molecule Generation
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GeoDiff Public
Forked from MinkaiXu/GeoDiffImplementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
Python MIT License UpdatedMay 17, 2023 -
ProteinMPNN Public
Forked from dauparas/ProteinMPNNCode for the ProteinMPNN paper
Jupyter Notebook MIT License UpdatedFeb 21, 2023 -
protein-sequence-models Public
Forked from microsoft/protein-sequence-modelsPython Other UpdatedJan 18, 2023 -
LMetalSite Public
Forked from biomed-AI/LMetalSiteMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning
Python UpdatedJan 12, 2023 -
EM-GAN Public
Forked from kiharalab/EM-GANEM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. It is based on 3D deep learning. It is aimed to help protein …
Jupyter Notebook GNU General Public License v3.0 UpdatedOct 20, 2022 -
deepEMhancer Public
Forked from rsanchezgarc/deepEMhancerDeep learning for cryo-EM maps post-processing
Python Apache License 2.0 UpdatedMay 30, 2022 -
Ca-Backbone-Prediction Public
Forked from DrDongSi/Ca-Backbone-PredictionDeep Learning for Ca Backbone Prediction from High Resolution CryoEM Data
Perl Other UpdatedMay 19, 2022 -
NAFNet Public
Forked from megvii-research/NAFNetThe state-of-the-art image restoration model without nonlinear activation functions.
Python Other UpdatedApr 29, 2022 -
RepLKNet-pytorch Public
Forked from DingXiaoH/RepLKNet-pytorchScaling Up Your Kernels to 31x31: Revisiting Large Kernel Design in CNNs (CVPR 2022)
Python MIT License UpdatedApr 13, 2022 -
alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold.
Python Apache License 2.0 UpdatedMar 26, 2022 -
Plug-and-Play Image Restoration with Deep Denoiser Prior (IEEE TPAMI 2021) (PyTorch)
Python MIT License UpdatedNov 25, 2021 -
reference-learning Public
Forked from tuelwer/reference-learningJupyter Notebook UpdatedOct 22, 2021 -
DeepSurvivalMachines Public
Forked from autonlab/auton-survivalDeep Survival Machines - Fully Parametric Survival Regression
Python MIT License UpdatedOct 7, 2021 -
mimic3-benchmarks Public
Forked from YerevaNN/mimic3-benchmarksPython suite to construct benchmark machine learning datasets from the MIMIC-III clinical database.
Python MIT License UpdatedJul 27, 2021 -
FIDDLE Public
Forked from MLD3/FIDDLEFlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139
Jupyter Notebook MIT License UpdatedJun 28, 2021