Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

pyTorch demo(s)

This repository contains the software to run a self-driving, multi-scale microscope and tools to process and analyse the resulting data.

Python3.X wrapper for Photometrics and QImaging PVCAM based cameras

computer vision models for single-cell phenotyping

Visual interpretability of image-based classification models by generative latent space disentanglement

SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising

prototype of napari with fastplolib as the graphics backend

Macros and methods to analyse bacterial bioimages

Python package for deep learning based image to image transformation

Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course

Advanced methods in bioimage analysis

Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

A Collection of Papers and Codes in CVPR2023/2022 about low level vision

Tracking and collecting papers/projects/others related to Segment Anything.

Material for the NEUBIAS Defragmentation Training School 2 day 2 workshop section entitled: Parallelization and heterogeneous computing: from pure CPU to GPU-accelerated image processing.

Presentations about biaflows

"Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analysis and new integrated methods for clo…

iSeeBetter: Spatio-Temporal Video Super Resolution using Recurrent-Generative Back-Projection Networks | Python3 | PyTorch | GANs | CNNs | ResNets | RNNs | Published in Springer Journal of Computat…

Modification of the iSeeBetter DL algorithm to make it compatible with microscopy images

MONAI Model Zoo that hosts models in the MONAI Bundle format.

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.

A beautiful, simple, clean, and responsive Jekyll theme for academics

responsive, dark-mode ready Jekyll theme designed for use as a personal website and portfolio

A minimalist Jekyll theme for running a blog or publication powered by Jekyll and GitHub Pages

A full graphical interface for the Raspberry Pi PiCamera. Written in Python using Tkinter.