Skip to content

fmalmeida/MpGAP v3.0
Compare
Choose a tag to compare
@fmalmeida fmalmeida released this 04 Nov 12:39
· 221 commits to master since this release
v3.0
4a58bd5
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

The pipeline

MpGAP, is a very customisable (easy to use) pipeline that uses state-of-the-art software for the de novo assembly of sequencing reads. It is capable of performing short reads only, long reads only and hybrid assemblies using data from Illumina, Pacbio and Oxford Nanopore Technologies sequencing platforms. As a plus, it has only Docker and Nextflow as dependencies.

Relase notes

In summary, this release reconfigures the pipeline to load input data from a samplesheet in order to make it possible to seamlessly analyse multiple samples at once. The release notes can be checked in the CHANGELOG.md.

Assets 2
Loading