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Update Plasmid finder #4845

Merged
merged 90 commits into from
Oct 14, 2022
Merged

Update Plasmid finder #4845

merged 90 commits into from
Oct 14, 2022

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pimarin
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@pimarin pimarin commented Oct 14, 2022

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pimarin and others added 28 commits September 16, 2022 11:49
* add a new tool BAKTA for genome annotation

* update bad indentation in shed.yml

* change file for size test

* remove a F letter added by mistake

* Add a checkbox for skip options
Add a checkbox for output selection list
Add a new test for the checkboxes

* change the help text format and change the regex

* add validator for organism level

* add regex and help

* fix in the help part

* update bakta version from 1.4.2 to 1.5.0 and change the galaxy tool version

* rebase

* change file for size test

* Add a checkbox for skip options
Add a checkbox for output selection list
Add a new test for the checkboxes

* add regex and help

* fix in the help part

* update bakta version from 1.4.2 to 1.5.0 and change the galaxy tool version

* rebase and update to 1.5.0

* restore 0 version
* Add HAPO-G: assembly polishing

* reorder param tag

* update to 1.3.3
@bgruening bgruening merged commit 6eff16f into galaxyproject:master Oct 14, 2022
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3 participants