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Mutect2 2.0.0
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@bshifaw bshifaw released this 25 May 19:40
· 17 commits to master since this release
2.0.0
ebb6dde
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Learn about vigilant mode.
  • Update to gatk4.0.4.0
  • Handle sample names with spaces correctly
  • Pass VCF indices correctly
  • Added mutect2_pon.wdl and json. Publicly available normal bams are not available, thus the provided json has not defined inputs for testing.
  • Added Parameter Description in Readme
  • Addition of mutect2 validation workflow
  • Added NIO enabled wdl
  • WDL updates include a couple of minor bug fixes
  • A new "given alleles" mode where the user can input a vcf of variants that Mutect2 is forced to genotype, regardless of how little evidence there may be.
  • Update oncotator docker image
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