Dev #8
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Dev #8
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bshifaw
commented
Dec 17, 2019
•
bshifaw
commented
- Updated WDLs to 1.0
- Removed GenerateOutputMap from bam2ubam because "this is not the best way to extract readgroup IDs. One issue is if other lines in the header contain the characters @rg, they will be caught here."
- Removed fc version of fastq2ubam because updates to Terra make working Data tables easier. Creating a seperate file with sample metadata isn't necessary.
- Added default variables to cram2bam
added 28 commits
February 23, 2018 18:24
removed gatk software requiremnt because repo will contain more than one wdl which may use different versions.
…ile containing a list of the generated ubams
…ersion into wdlupdate
…fc version of fastq2ubam, added defaults to cram2bam
…faults to cram2bam
kachulis
reviewed
Dec 18, 2019
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