Rofi: A window switcher, application launcher and dmenu replacement

A fast image processing library with low memory needs.

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

Jsmn is a world fastest JSON parser/tokenizer. This is the official repo replacing the old one at Bitbucket

Multi-format archive and compression library

RNA-seq aligner

Tools (written in C using htslib) for manipulating next-generation sequencing data

SRA Tools

The world's most popular non-default computer lockscreen.

🔬 BEDOPS: high-performance genomic feature operations

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

Simple oligo analysis and primer design

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Yet another Hi-C scaffolding tool

Fast random access of gzip files in Python

Deconvolution of widefield microscopy images and generation of point spread functions

R interface to genome annotation files and the UCSC genome browser

Convert Nikon nd2 files to tiff

A GTK3 GUI for deconwolf

Source data for GPSeq manuscript.