initial commit

DESCRIPTION

@@ -1,15 +1,13 @@
-Package: thesisdown
-Title: An updated R Markdown thesis template using the bookdown package
-Version: 0.2.0.9000
+Package: penguindown
+Title: An updated R Markdown YSU thesis template using the thesisdown package
+Version: 0.1.0
 Authors@R: c(
-    person("Chester", "Ismay", email = "chester.ismay@gmail.com", role = c("cre", "aut")),
-    person("Nick", "Solomon", email = "nick@nicksolomon.me", role = "aut"),
-    person("Shir", "Dekel", email = "shirdekel@yahoo.com.au", role = "ctb"))
-Description: Using the bookdown package and LaTeX and Word thesis templates from
-    Reed College, this package aims to encourage reproducible research using
+    person("G. Jay", "Kerns", email = "gkerns@ysu.edu", role = c("cre", "aut")),
+Description: Using the thesisdown package and LaTeX and Word thesis templates from
+    Youngstown State University, this package aims to encourage reproducible research using
     simple Markdown syntax while embedding all of the R code to produce plots
     and analyses as well.
-Maintainer: Chester Ismay <chester.ismay@gmail.com>
+Maintainer: G. Jay Kerns <gkerns@ysu.edu>
 Depends:
     R (>= 3.2.0)
 Imports: 

LICENSE

@@ -1,2 +1,2 @@
-YEAR: 2020
-COPYRIGHT HOLDER: Chester Ismay
+YEAR: 2022
+COPYRIGHT HOLDER: G. Jay Kerns

LICENSE.md

@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2020 Chester Ismay
+Copyright (c) 2022 G. Jay Kerns
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

NEWS.md

@@ -1,83 +1,4 @@
-# thesisdown (development version - 0.2.0.9000)
-
-## Breaking changes to the template
-
-## Cosmetic changes to the template (non-breaking)
-
-- [@eugenesit](https://github.com/eugenesit) [discovered bug in output of
-references](https://github.com/ismayc/thesisdown/issues/157) and it was
-fixed with [this commit](https://github.com/ismayc/thesisdown/pull/159/commits/29ff90873e3a48cf3c8a5f80f945459c5f4389dc)
-
-## Updates to the package
-
-- Added thesisdown RStudio project template, which needs
-{R.utils} to `copyDirectory()`
-- Added GitHub Actions PR and issue lock
-
-# thesisdown 0.1.1
-
-## Cosmetic changes to the template (non-breaking)
-
-- Finally figured out a long standing issue with csl-refs by using {rticles} code, fixing issue ([#133](https://github.com/ismayc/thesisdown/issues/133))
-
-# thesisdown 0.2.0
-
-## Breaking changes to the template
-
-- None 
-
-## Cosmetic changes to the template (non-breaking)
-
-- [@shirdekel](https://github.com/shirdekel) added functionality to allow for other pandoc args to be
-specified beyond setting the chapter as top level
-
-## Updates to the package
-
-- Added thesisdown RStudio project template, which needs
-{R.utils} to `copyDirectory()`
-- Added GitHub Actions PR and issue lock
-
-# thesisdown 0.1.1
-
-## Cosmetic changes to the template (non-breaking)
-
-- Finally figured out a long standing issue with csl-refs by using {rticles} code, fixing issue ([#133](https://github.com/ismayc/thesisdown/issues/133))
-
-# thesisdown 0.1.0
-
-## Breaking changes to the template
-
-- Fixed issue ([#86](https://github.com/ismayc/thesisdown/issues/86)) with references not showing in Gitbook version in [#91](https://github.com/ismayc/thesisdown/pull/91) PR
-  - [Moved preliminary content files for the Gitbook to a `prelims` folder](https://github.com/ismayc/thesisdown/pull/91/commits/46dce4572fe027f51e1335cab4348d2492e61265). Note that this was needed since using the Knit button in RStudio with {thesisdown} does not appear to allow for the `rmd_files` argument to be used in building theses.
-  - [Fixed \headheight is too small error](https://github.com/ismayc/thesisdown/pull/91/commits/4374e7a81b9d16fa79eb2b9a483cf4cfcd71af6f)
-  - [Updated the YAML of `index.Rmd` to ensure references pass through in Gitbook](https://github.com/ismayc/thesisdown/pull/91/commits/42aecc61f662e19f32c0a7b3e1e2fc7cfa3dcd92)
-
-## Cosmetic changes to the template (non-breaking)
-
-- [Converted http to https throughout Rmd files](https://github.com/ismayc/thesisdown/commit/aa4bac89ab7cf91d7898d9b52d737b00e6b6f71a)
-- [Reduced `flights.csv` included data](https://github.com/ismayc/thesisdown/commit/0a6bf0c5d6bdb75be4e09a58b588feeaff778af0) to prepare for sending to CRAN
-- Fixed issue (#[116](https://github.com/ismayc/thesisdown/issues/116)) with toc depth not showing in table of contents beyond depth of 3 in [#117](https://github.com/ismayc/thesisdown/pull/117) PR
-- Removed pandoc table from Chapter 3 as multiple reports (here's [one](https://github.com/ismayc/thesisdown/issues/125)) of it continuing to not build were reported in [#130](https://github.com/ismayc/thesisdown/pull/130) PR
-
-## Updates to the package
-
-- Fixed failure of template to build due to `pandoc` changes brought up in Issue [#122](https://github.com/ismayc/thesisdown/issues/122) ([#124](https://github.com/ismayc/thesisdown/pull/124))
-- Added support for customizing of `thesisdown::gitbook()` ([#84](https://github.com/ismayc/thesisdown/pull/84))
-- Added hex sticker ([1](https://github.com/ismayc/thesisdown/commit/ababba5437ee2fe0632c74d5428fed35b911c751) and [2](https://github.com/ismayc/thesisdown/commit/d556073c94ae5069d4373fc73811b3115905c56f))
-- [Created {pkgdown} site](https://github.com/ismayc/thesisdown/commit/7febd70b98ae6e8d104bf1080e066468d030b968)
-- [Added MIT License](https://github.com/ismayc/thesisdown/pull/91/commits/7ba5cf1ea24876e248ae9e78d28a43212b6f759b) and other cosmetic tweaks to [#91](https://github.com/ismayc/thesisdown/pull/91) PR
-- [Switched to using `Imports` instead of `Depends` for best practice](https://github.com/ismayc/thesisdown/commit/2a39610b8f3a97974d9220976edb1d14cd74d6e5#diff-35ba4a2677442e210c23a00a5601aba3R14)
-  - [Updated template Rmd files to reflect change to Imports](https://github.com/ismayc/thesisdown/commit/b5dd154e8c87cc9f971b185e667ea4a8b104ddcd)
-  - Added Chester Ismay as author and creator to DESCRIPTION
-
-# thesisdown 0.0.2
-
-- Changed default filename (in directions) to be `index` instead of `skeleton` to match with gitbook requirements
-- Added preliminary files `00--prelim.Rmd` and changed `abstract.Rmd` to `00-abstract.Rmd` to match
-with renaming of files so that `index.Rmd` always comes last alphabetically
-- Removed _book and _bookdown_files directories since they are stored at <https://github.com/ismayc/thesisdown_book/tree/gh-pages>
-
-# thesisdown 0.0.1
+# penguindown 0.1.0
 
 - Initial release
 - PDF version working

R/.setup.R

@@ -5,6 +5,6 @@ invisible(lapply(suggest_pkgs, usethis::use_package, type = "Suggests"))
 
 usethis::use_pkgdown()
 usethis::use_readme_rmd()
-usethis::use_mit_license(name = "Chester Ismay")
+usethis::use_mit_license(name = "G. Jay Kerns")
 
 usethis::use_package("R.utils", type = "Imports")

inst/rmarkdown/templates/thesis/template.yaml

@@ -1,4 +1,4 @@
 name:  Thesis
 description: >
- Template for creating a Senior Thesis at Reed College using R Markdown based on the Reed College LaTeX and Word templates and the R bookdown package.
+ Template for creating a Master's Thesis at Youngstown State University using R Markdown based on the YSU LaTeX and Word templates and the R thesisdown package.
 

inst/rstudio/templates/project/skeleton.dcf

@@ -1,4 +1,4 @@
-Title: Thesis Project using thesisdown
-Binding: thesisdown_skeleton
+Title: Thesis Project using penguindown
+Binding: penguindown_skeleton
 OpenFiles: index.Rmd
 Icon: graduation_cap.png