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Improvements for refinement finding #198

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merged 4 commits into from
Jan 11, 2022
Merged

Improvements for refinement finding #198

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c565607
Make leaving data gatherer log more clear
dianakolusheva Dec 7, 2021
7fdbfad
Change the batch indices in the logs
dianakolusheva Dec 8, 2021
7ee0d65
Simplify implementation of refinement finding
bgyori Dec 9, 2021
cd15ea4
Remove unused index
dianakolusheva Dec 9, 2021
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Remove unused index
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@dianakolusheva
dianakolusheva committed Dec 9, 2021
commit cd15ea42df03edf42beae2cd67e00b1c295ba004
4 changes: 1 addition & 3 deletions indra_db/preassembly/preassemble_db.py
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Expand Up @@ -551,9 +551,7 @@ def _supplement_support(self, db, new_hashes, start_time, continuing=False):

# We first get all the new statements in batches
all_outer_stmts = []
for outer_idx, (out_s, out_e) in enumerate(idx_batches[start_idx:]):
outer_idx += 1 # log starting at 1
outer_idx += start_idx
for (out_s, out_e) in idx_batches[start_idx:]:
# Create the statements from the JSONs
npa_json_q = db.filter_query(
db.PAStatements.json,
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