📝 Create vignettes/benchmark

⬆️ Update tumopp to v0.8.4
🚧 Create system_tumopp() for benchmarking
📝 Advise to check updates [ci skip]

📝 Fix URL in tummop description

⬆️ Update tumopp to v0.8.3
📝 pkgdown::build_site() [ci skip]
📝 Improve documentation
✅ Install devscripts package for R-devel
📝 pkgdown::build_site() [ci skip]
📝 Advise to use list for tumopp args [ci skip]
⬆️ Follow tidyr 1.0.0 updates
⬆️ Update roxygen to 7.0
🎨 Handle boolean and numeric arguments
🎨 Remove warnings
✅ Remove trash in test-vaf.R
🎨 Replace expand.grid with tidyr::crossing
📝 Add codecov and CRAN badges [ci skip]
⬆️ Update rlang to 0.4.0 [ci skip]
🐛 Work around r-lib/covr#377
🎨 Clean sample.R
✅ Add test-hex.R
✅ Add test-coord.R
🔧 Update dependencies
✅ Add test for generate_args()
📝 Update docs according to the previous commit
💥 Return tibble from make_args()
🔥 Remove Rcpp::plugins and CXX_STD
🔧 Avoid R 3.6 CXX because it includes -std=gnu++11
⬆️ Drop R 3.4 support
⬆️ Require CMake 3.8.0
📝 Suggest devtools not remotes in README [ci skip]

⬆️ Update tumopp to v0.8.2

⬆️ Remove testthat::context()
✅ Add graph-related tests
🎨 Separate upstream_vertices()
🔧 Try `brew install cmake` if not found
🔧 Do not export cpp_tumopp()
📝 Create _pkgdown.yml and organize reference [ci skip]
🔧 Ignore src/*.o.tmp [ci skip]
✅ Set covr::codecov(type = "all")
🎨 Apply styler
🎨 Update demo/
✅ Add tests for read/write functions
✅ Add tests for make_args()
✅ Add test for make_vaf()
📝 Update make_vaf() and vignette
⚡ Refactor tally_vaf()
⚡ Refactor sample_bulk() with nth_element()
⚡ Replace rowSums() with Reduce(`+`, ...)
⬆️ Update versions in Imports
📝 Run pkgdown::build_site() [ci skip]
🎨 Replace single-quotes with double-quotes
⬆️ Workaround heavywatal/rigraphlite#2
✅ Start using covr
✅ Start using testthat
✅ Create ~/.R/Makevars and set CXX14 on Travis
🔧 Replace igraph with igraphlite
📝 Fail fast and message more kindly if cmake not found
📝 Prefer remotes::install_github [ci skip]
✅ Set _R_CHECK_* and MAKEFLAGS
🔧 Set "StagedInstall: no" as a workaround for R 3.6
📝 Run pkgdown::build_site() [ci skip]
🎨 Apply styler
🎨 Move BUILD_TESTING OFF to a better location

⬆️ Follow tumopp v0.8.1

🎨 Detect root in distances_from_origin()
✨ Add functions to get sink nodes
🎨 Replace NROW with nrow
⚡ Refactor make_igraph(); create as_symbolic_edgelist()
⚡ Use own graph_from_symbolic_edgelist()
⚡ Refactor make_igraph()
🎨 Change make_samples() output from binary to count
📝 Fix VignetteIndexEntry
✅ Add rmarkdown to "Suggests"
📝 Create vignettes/growth.Rmd
📝 pkgdown::build_site() [ci skip]
⬆️ Ignore Meta/ and doc/ (devtools?)
⚡ Refactor make_sample()
🎨 Refactor count_sink()
📝 document() and pkgdown::build_site() [ci skip]
📝 Replace \description with \details
📝 pkgdown::build_site() [ci skip]
📝 Add "Notes: " to L-P message
📝 Update vignettes [ci skip]
📝 Amend the link to "Get started" [ci skip]
🔧 Create _pkgdown.yml [ci skip]
🎨 Apply styler
🎨 Refactor plot_capture_rate()
⚡ Refactor add_node_property()
🎨 Set colnames before as_tibble()
✅ Remove "sudo: false"
📝 Remove \return [ci skip]
📝 pkgdown::build_site() [ci skip]
⬆️ roxygen2 6.1.1 [ci skip]
💥 Pass ids to as_idx() and remove NA in it
✨ Add count_extant()
🔥 Remove superfluous message in tumopp()
✨ Add rownames to make_sample() output

⬆️ Refactor build process

✨ Add an option to skip graph conversion
✅ Reconfigure Travis notification

✨ Improve read functions

⬆️ Follow tumopp v0.7.0: empty outputs
📝 Refer to the parameter list [ci skip]
🎨 Clean .gitignore [ci skip]
📝 pkgdown::build_site() [ci skip]
✅ Configure Slack notification [ci skip]
✨ Add distances_mrs() for shortcut
🐛 Fix make_args(): remove nreps and use rep() instead
📝 pkgdown::build_site() [ci skip]

First release tag