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Add MetaShift dataset #3900

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merged 57 commits into from
Apr 1, 2022
Merged

Add MetaShift dataset #3900

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a7c4160
Initial draft for the MetaShift Dataset.
dnaveenr Mar 9, 2022
599c46f
add dataset preprocessing and yield images.
dnaveenr Mar 12, 2022
7936b0b
use selected classes.
dnaveenr Mar 12, 2022
5078e1c
format code as required.
dnaveenr Mar 12, 2022
85e8b8c
Merge remote-tracking branch 'upstream/master' into add_metashift_dat…
dnaveenr Mar 12, 2022
b15258a
add selected_classes as a config parameter.
dnaveenr Mar 12, 2022
5831aa1
update fields in Dataset Card.
dnaveenr Mar 12, 2022
a4f7635
add dataset tagset.
dnaveenr Mar 13, 2022
2e0a8be
Update datasets/metashift/README.md
dnaveenr Mar 15, 2022
2cc4e1c
Update datasets/metashift/README.md
dnaveenr Mar 15, 2022
57f0cdd
Update datasets/metashift/README.md
dnaveenr Mar 15, 2022
8809d91
Update datasets/metashift/README.md
dnaveenr Mar 15, 2022
e005dfe
Update datasets/metashift/README.md
dnaveenr Mar 15, 2022
1d882b3
Update datasets/metashift/metashift.py
dnaveenr Mar 15, 2022
67c9a86
Update datasets/metashift/metashift.py
dnaveenr Mar 15, 2022
8c26490
Update datasets/metashift/metashift.py
dnaveenr Mar 15, 2022
056ac3c
Update datasets/metashift/metashift.py
dnaveenr Mar 15, 2022
6803789
Update datasets/metashift/metashift.py
dnaveenr Mar 15, 2022
03e809d
Merge branch 'add_metashift_dataset' of https://github.com/dnaveenr/d…
dnaveenr Mar 15, 2022
a74eb21
add annotation info.
dnaveenr Mar 15, 2022
c690e53
use multi-line comment.
dnaveenr Mar 16, 2022
8278a0b
add minor fixes.
dnaveenr Mar 16, 2022
2dfc1ad
add the generated meta-graphs to the card as images.
dnaveenr Mar 16, 2022
0cc1bdd
usage of os.path.join for src_image_path.
dnaveenr Mar 16, 2022
1fbcd07
add config to generate metashift-attributes dataset.
dnaveenr Mar 18, 2022
4c2b30c
add config to expose image metadata.
dnaveenr Mar 19, 2022
ec809a8
add contants as config parameters.
dnaveenr Mar 20, 2022
e2f9141
add Dataset Usage section to cards.
dnaveenr Mar 20, 2022
52d6341
Merge remote-tracking branch 'upstream/master' into add_metashift_dat…
dnaveenr Mar 20, 2022
580a767
add name, dataset version to MetashiftConfig.
dnaveenr Mar 21, 2022
4553b47
add dataset_infos.json
dnaveenr Mar 21, 2022
1fed5ca
Merge remote-tracking branch 'upstream/master' into add_metashift_dat…
dnaveenr Mar 21, 2022
077b6cb
pass URLs to images and add alt tags.
dnaveenr Mar 22, 2022
2974912
set default classes as in original repo.
dnaveenr Mar 24, 2022
1a89999
add dummy data.
dnaveenr Mar 24, 2022
41a1cdf
format code.
dnaveenr Mar 24, 2022
bcbae91
Merge remote-tracking branch 'upstream/master' into add_metashift_dat…
dnaveenr Mar 24, 2022
a602250
update dataset structure section for config options.
dnaveenr Mar 24, 2022
6361b5c
Update datasets/metashift/README.md
dnaveenr Mar 28, 2022
02e7518
Update datasets/metashift/README.md
dnaveenr Mar 28, 2022
2efc618
Update datasets/metashift/metashift.py
dnaveenr Mar 28, 2022
945d2b1
add contributions section
lhoestq Mar 29, 2022
38a1ec5
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
9272306
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
f64fce4
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
8e9c45e
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
e71170c
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
eec0a71
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
8f7419f
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
550182a
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
117a733
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
e516fd7
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
d0dfc76
Update datasets/metashift/README.md
dnaveenr Mar 31, 2022
62c0d95
indent params list and update with suggestions.
dnaveenr Mar 31, 2022
17a7005
Merge remote-tracking branch 'upstream/master' into add_metashift_dat…
dnaveenr Mar 31, 2022
d49a37e
Apply suggestions from code review
lhoestq Apr 1, 2022
2beb379
Update datasets/metashift/metashift.py
lhoestq Apr 1, 2022
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Update datasets/metashift/metashift.py
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@lhoestq
lhoestq committed Apr 1, 2022
commit 2beb379f5cf59d2687e2c7ec6305fe2cca26aaf2
2 changes: 1 addition & 1 deletion datasets/metashift/metashift.py
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Original file line number Diff line number Diff line change
Expand Up @@ -271,7 +271,7 @@ def _preprocess_groups(self, pkl_save_path, output_files_flag=False, subject_cla
subject_group_summary_dict[subject_str][node_name] = imageID_set_len

##################################
# Print the subject dict stats
# Get the subject dict stats
##################################
subject_group_summary_list = sorted(
subject_group_summary_dict.items(), key=lambda x: sum(x[1].values()), reverse=True
Expand Down