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Optimize RocksDB WAL file #6328

Merged
merged 4 commits into from
Jan 4, 2024
Merged

Optimize RocksDB WAL file #6328

merged 4 commits into from
Jan 4, 2024

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fab-10
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@fab-10 fab-10 commented Dec 22, 2023

PR description

Currently Besu uses the default RocksDB WAL options, with the result that usually the WAL files could occupy ~15GB of disk space, due to the fact that different column families are flushed at very different intervals, this has also the bad effect of slow restarts, when Besu has to parse an reapply all these WAL files.

Capping the WAL files total size to 1GB and reusing old files when possible, has the advantage of a faster restart, and a more linear disk usage, instead of the classic saw tooth shape that we see today.

Fixed Issue(s)

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>
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github-actions bot commented Dec 22, 2023

  • I thought about documentation and added the doc-change-required label to this PR if updates are required.
  • I thought about the changelog and included a changelog update if required.
  • If my PR includes database changes (e.g. KeyValueSegmentIdentifier) I have thought about compatibility and performed forwards and backwards compatibility tests

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>
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LGTM, I'm wondering why would WAL occupy 15 GiB, each memtable has 64 MiB size, knowing that there are two memtables per column family and 7 column families in worst case, this gives as :
64 * 2 * 7 = 896 MiB

We can find in RocksDB documentation this example :

For example, with 15 column families, each with
   *  write_buffer_size = 128 MB
   *  max_write_buffer_number = 6
   *  max_total_wal_size will be calculated to be [15 * 128MB * 6] * 4 = 45GB

I couldn't find in the documentation what is 4 in this formula, but even by applying this formula, the result will be 3584 MiB (896 * 4)

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fab-10 commented Jan 4, 2024

From https://github.com/facebook/rocksdb/wiki/Write-Ahead-Log-%28WAL%29

DBOptions::max_total_wal_size
In order to limit the size of WALs, RocksDB uses DBOptions::max_total_wal_size as the trigger of column family flush. Once WALs exceed this size, RocksDB will start forcing the flush of column families to allow deletion of some oldest WALs. This config can be useful when column families are updated at non-uniform frequencies. If there's no size limit, users may need to keep really old WALs when the infrequently-updated column families hasn't flushed for a while.

So the ~15GB the WALs occupy, consist mostly of unneeded data, since the data has already been written for all the column families but one that is infrequently flushed, and that single column family is enough to keep these files around, setting the limit forces a regular flush of that column family.

@fab-10 fab-10 marked this pull request as ready for review January 4, 2024 16:38
@fab-10 fab-10 enabled auto-merge (squash) January 4, 2024 16:39
@fab-10 fab-10 merged commit 2f19228 into hyperledger:main Jan 4, 2024
18 checks passed
@fab-10 fab-10 deleted the rocksdb-wal-opt branch January 4, 2024 18:03
fab-10 added a commit to Consensys/linea-besu that referenced this pull request Jan 8, 2024
* mark deleted slot during clear storage step (hyperledger#6305)

Signed-off-by: Karim Taam <karim.t2am@gmail.com>
Co-authored-by: garyschulte <garyschulte@gmail.com>

* made directory structure of tests match source; fixed one typo (hyperledger#6337)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* migrate controller tests to junit 5 (hyperledger#6338)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* add new forkids for testnets, update forkid test to Junit5, no longer need named network specific trusted setups (hyperledger#6322)

Signed-off-by: jflo <justin+github@florentine.us>

* Fix trielog shipping issue during self destruct (hyperledger#6340)

* fix trielog shipping issue

Signed-off-by: Karim Taam <karim.t2am@gmail.com>

* bump gradle properties version and adjust changelog to match release (hyperledger#6347)

Signed-off-by: garyschulte <garyschulte@gmail.com>

* finalized cancun spec (hyperledger#6351)

* finalized cancun spec

Signed-off-by: jflo <justin+github@florentine.us>

* finalized cancun spec

Signed-off-by: jflo <justin+github@florentine.us>

---------

Signed-off-by: jflo <justin+github@florentine.us>

* Optimize RocksDB WAL file (hyperledger#6328)


Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Make RPC reason settable, pass execution failure reason in RPC error message (hyperledger#6343)

* Make RPC reason settable, pass execution failure reason in RPC error message

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update unit tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update change log

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update integration tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

---------

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* TestWatcher junit5 (hyperledger#6339)

* TestWatcher junit5
* add test class and method name to context
* moved the testwatcher junit5 function to a new junit5 superclass
* one qbft test to junit5 superclass

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>
Co-authored-by: Stefan Pingel <16143240+pinges@users.noreply.github.com>

* Migrate BFT tests to junit 5 (hyperledger#6350)

* bft tests to junit 5
* base class for pki extend AcceptanceTestBaseJunit5
* try/catch in case of empty optionals
* fixed parameterization method

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* fixing on selfdestruct (hyperledger#6359)

Signed-off-by: Karim Taam <karim.t2am@gmail.com>

* migrate clique tests fully to junit5 (hyperledger#6362)

* migrate clique tests fully to junit5

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* fixed link to logging docs (hyperledger#6366)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* Move logging to RunnerBuilder (hyperledger#6367)

Signed-off-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>

* Use synchronized call to access the chain head block in `eth_estimateGas` (hyperledger#6345)

* Use synchronized call to access the chain head block in estimateGas()

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Add error log entries when throwing internal error from estimateGas()

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update unit tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update changelog

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

---------

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

---------

Signed-off-by: Karim Taam <karim.t2am@gmail.com>
Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>
Signed-off-by: jflo <justin+github@florentine.us>
Signed-off-by: garyschulte <garyschulte@gmail.com>
Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>
Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>
Signed-off-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>
Co-authored-by: Karim TAAM <karim.t2am@gmail.com>
Co-authored-by: garyschulte <garyschulte@gmail.com>
Co-authored-by: Sally MacFarlane <macfarla.github@gmail.com>
Co-authored-by: Justin Florentine <justin+github@florentine.us>
Co-authored-by: Matt Whitehead <matthew1001@gmail.com>
Co-authored-by: Stefan Pingel <16143240+pinges@users.noreply.github.com>
Co-authored-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>
fab-10 added a commit to Consensys/linea-besu that referenced this pull request Jan 12, 2024
* mark deleted slot during clear storage step (hyperledger#6305)

Signed-off-by: Karim Taam <karim.t2am@gmail.com>
Co-authored-by: garyschulte <garyschulte@gmail.com>

* made directory structure of tests match source; fixed one typo (hyperledger#6337)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* migrate controller tests to junit 5 (hyperledger#6338)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* add new forkids for testnets, update forkid test to Junit5, no longer need named network specific trusted setups (hyperledger#6322)

Signed-off-by: jflo <justin+github@florentine.us>

* Fix trielog shipping issue during self destruct (hyperledger#6340)

* fix trielog shipping issue

Signed-off-by: Karim Taam <karim.t2am@gmail.com>

* bump gradle properties version and adjust changelog to match release (hyperledger#6347)

Signed-off-by: garyschulte <garyschulte@gmail.com>

* finalized cancun spec (hyperledger#6351)

* finalized cancun spec

Signed-off-by: jflo <justin+github@florentine.us>

* finalized cancun spec

Signed-off-by: jflo <justin+github@florentine.us>

---------

Signed-off-by: jflo <justin+github@florentine.us>

* Optimize RocksDB WAL file (hyperledger#6328)


Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Make RPC reason settable, pass execution failure reason in RPC error message (hyperledger#6343)

* Make RPC reason settable, pass execution failure reason in RPC error message

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update unit tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update change log

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update integration tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

---------

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* TestWatcher junit5 (hyperledger#6339)

* TestWatcher junit5
* add test class and method name to context
* moved the testwatcher junit5 function to a new junit5 superclass
* one qbft test to junit5 superclass

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>
Co-authored-by: Stefan Pingel <16143240+pinges@users.noreply.github.com>

* Migrate BFT tests to junit 5 (hyperledger#6350)

* bft tests to junit 5
* base class for pki extend AcceptanceTestBaseJunit5
* try/catch in case of empty optionals
* fixed parameterization method

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* fixing on selfdestruct (hyperledger#6359)

Signed-off-by: Karim Taam <karim.t2am@gmail.com>

* migrate clique tests fully to junit5 (hyperledger#6362)

* migrate clique tests fully to junit5

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* fixed link to logging docs (hyperledger#6366)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* Move logging to RunnerBuilder (hyperledger#6367)

Signed-off-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>

* Use synchronized call to access the chain head block in `eth_estimateGas` (hyperledger#6345)

* Use synchronized call to access the chain head block in estimateGas()

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Add error log entries when throwing internal error from estimateGas()

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update unit tests

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Update changelog

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

---------

Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>

* Add --X-trie-log subcommand (hyperledger#6303)

* Add x-trie-log subcommand for one-off trie log backlog prune

Signed-off-by: Simon Dudley <simon.dudley@consensys.net>
Signed-off-by: Gabriel Fukushima <gabrielfukushima@gmail.com>

---------

Signed-off-by: Simon Dudley <simon.dudley@consensys.net>
Signed-off-by: Gabriel Fukushima <gabrielfukushima@gmail.com>
Co-authored-by: Simon Dudley <simon.dudley@consensys.net>

* fix typos (hyperledger#6368)

Signed-off-by: vuittont60 <81072379+vuittont60@users.noreply.github.com>

* Added alias --sync-min-peers for --fast-sync-min-peers (hyperledger#6372)

* sync-min-peers as an alias
* added unit tests

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

---------

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* Fix: Fallback to getName when canonicalName is null in BlockHeaderValidator DEBUG log (hyperledger#6332)

* fallback to simple name when canonical name is null
* use getName instead of getSimpleName to include the package name

Signed-off-by: Manoj P R <manojpramesh@gmail.com>

---------

Signed-off-by: Manoj P R <manojpramesh@gmail.com>
Co-authored-by: Sally MacFarlane <macfarla.github@gmail.com>

* fix: use UID 1000 for besu user (hyperledger#6358) (hyperledger#6360)

The openjdk-latest Docker image is using UID 1001 for besu, because its
base image ubuntu:23.10 now contains a default "ubuntu" user with UID
1000. (This UID change causes the besu user with UID 1001 to not have
access to files created for past versions with UID 1000.)

We now remove the default ubuntu user and explicitly use UID 1000 when
creating the besu user.

Signed-off-by: Hal Blackburn <hwtb2@cam.ac.uk>

* Ignore generated files when running the spdx license check (hyperledger#6379)

Signed-off-by: Meredith Baxter <mbaxter.dev@gmail.com>

* full sync - don't fail startup if sync-min-peers specified (hyperledger#6373)

Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>

* Copy also computed fields, when doing a Transaction detached copy (hyperledger#6329)

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Disable txpool when not in sync (hyperledger#6302)


Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump to nex release snapshot 24.1.1 (hyperledger#6383)

* release next snapshot 24.1.1

Signed-off-by: garyschulte <garyschulte@gmail.com>

* move recent changelog items to 24.1.1-SNAPSHOT

Signed-off-by: garyschulte <garyschulte@gmail.com>

---------

Signed-off-by: garyschulte <garyschulte@gmail.com>

* Correct Tangerine Whistle definition in Fluent EVM APIs. (hyperledger#6382)

The fluent API incorrectly added the code size limit in Tangerine
Whistle instead of first adding it in Spurious Dragon.

Signed-off-by: Danno Ferrin <danno.ferrin@swirldslabs.com>

* [MINOR] Fix pki tests condition check on mac (hyperledger#6387)

Signed-off-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>

* Upgrade dependencies (hyperledger#6377)

* Bump com.github.oshi:oshi-core to 6.4.10

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.github.tomakehurst to org.wiremock 3.3.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.google.auto.service:auto-service to 1.1.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.google.dagger group to 2.50

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.graphql-java:graphql-java to 21.3

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.splunk.logging:splunk-library-javalogging to 1.11.8

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump com.squareup.okhttp3:okhttp to 4.12.0
Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump commons-io:commons-io to 2.15.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump dnsjava:dnsjava to 3.5.3

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump info.picocli group to 4.7.5

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump io.grpc group to 1.60.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump io.kubernetes:client-java to 18.0.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump io.netty group to 4.1.104.Final

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump net.java.dev.jna:jna to 5.14.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.apache.commons:commons-compress to 1.25.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.apache.commons:commons-lang3 to 3.14.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.apache.commons:commons-text to 1.11.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.apache.logging.log4j group to 2.22.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Redorder io.tmio group

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.assertj:assertj-core to 3.25.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.bouncycastle group to 1.77

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.fusesource.jansi:jansi to 2.4.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.immutables group 2.10.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.java-websocket:Java-WebSocket to 1.5.5

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.jetbrains.kotlin:kotlin-stdlib to 1.9.22

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.junit.jupiter group to 5.10.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.jupnp group to 2.7.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.rocksdb:rocksdbjni to 8.9.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.slf4j group to 2.0.10

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.springframework.security:spring-security-crypto to 6.2.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.testcontainers:testcontainers to 1.19.3

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.web3j group to 4.10.3

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Bump org.xerial.snappy:snappy-java to 1.1.10.5

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Regenerate gradle verification metadata

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Update commons-codec:commons-codec to 1.16.0

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Update org.junit.vintage:junit-vintage-engine to 5.10.1

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Update CHANGELOG

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

---------

Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* add a fallback for docker detection on Mac (hyperledger#6356)

Signed-off-by: garyschulte <garyschulte@gmail.com>

* Fix test flackyness of acceptanceTestsPermissioning  (hyperledger#6384)


Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>
Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>
Co-authored-by: Sally MacFarlane <macfarla.github@gmail.com>

* Upgrade `com.fasterxml.jackson` dependencies (hyperledger#6378)


Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>

* Use mining beneficiary from protocol spec in TraceServiceImpl (hyperledger#6390)

* use mining beneficiary from protocol spec

Signed-off-by: Daniel Lehrner <daniel.lehrner@consensys.net>

---------

Signed-off-by: Daniel Lehrner <daniel.lehrner@consensys.net>
Co-authored-by: Sally MacFarlane <macfarla.github@gmail.com>

* Update verification metadata and allowed licenses for Linea-Besu

---------

Signed-off-by: Karim Taam <karim.t2am@gmail.com>
Signed-off-by: Sally MacFarlane <macfarla.github@gmail.com>
Signed-off-by: jflo <justin+github@florentine.us>
Signed-off-by: garyschulte <garyschulte@gmail.com>
Signed-off-by: Fabio Di Fabio <fabio.difabio@consensys.net>
Signed-off-by: Matthew Whitehead <matthew1001@gmail.com>
Signed-off-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>
Signed-off-by: Simon Dudley <simon.dudley@consensys.net>
Signed-off-by: Gabriel Fukushima <gabrielfukushima@gmail.com>
Signed-off-by: vuittont60 <81072379+vuittont60@users.noreply.github.com>
Signed-off-by: Manoj P R <manojpramesh@gmail.com>
Signed-off-by: Hal Blackburn <hwtb2@cam.ac.uk>
Signed-off-by: Meredith Baxter <mbaxter.dev@gmail.com>
Signed-off-by: Danno Ferrin <danno.ferrin@swirldslabs.com>
Signed-off-by: Daniel Lehrner <daniel.lehrner@consensys.net>
Co-authored-by: Karim TAAM <karim.t2am@gmail.com>
Co-authored-by: garyschulte <garyschulte@gmail.com>
Co-authored-by: Sally MacFarlane <macfarla.github@gmail.com>
Co-authored-by: Justin Florentine <justin+github@florentine.us>
Co-authored-by: Fabio Di Fabio <fabio.difabio@consensys.net>
Co-authored-by: Matt Whitehead <matthew1001@gmail.com>
Co-authored-by: Stefan Pingel <16143240+pinges@users.noreply.github.com>
Co-authored-by: Gabriel-Trintinalia <gabriel.trintinalia@consensys.net>
Co-authored-by: Gabriel Fukushima <gabrielfukushima@gmail.com>
Co-authored-by: Simon Dudley <simon.dudley@consensys.net>
Co-authored-by: vuittont60 <81072379+vuittont60@users.noreply.github.com>
Co-authored-by: Manoj P R <manojpramesh@gmail.com>
Co-authored-by: Hal Blackburn <hal.blackburn@gmail.com>
Co-authored-by: mbaxter <mbaxter.dev@gmail.com>
Co-authored-by: Danno Ferrin <danno.ferrin@swirldslabs.com>
Co-authored-by: daniellehrner <daniel.lehrner@consensys.net>
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2 participants