A Python framework for high performance GPU simulation and graphics

Facilitates searching, screening, and organizing large chemical databases

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

Examples of single-cell genomic analysis accelerated with RAPIDS

Getting started guide to using GPUs for nCoV2019 research

AI Toolkit for Healthcare Imaging

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

Program for aligning DNA sequences, a pairwise aligner.

A PyTorch Basecaller for Oxford Nanopore Reads

Deep learning based processing of Atac-seq data

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

De novo genome assembler for long uncorrected reads

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which wil…

SDK for GPU accelerated genome assembly and analysis

Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"

Simple and efficient access to genomic data for deep learning models.

TF MOtif Discovery from Importance SCOres

Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data

JupyterLab computational environment.

Model zoo for genomics

Kipoi's model zoo API

A columnar data container that can be compressed.

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

A collaboratively written review paper on deep learning, genomics, and precision medicine

Deep Learning for humans

Downloader for ENCODE

ATAC-seq and DNase-seq processing pipeline