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Achievement: YOLOAchievement: Pull Sharkx2Achievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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@AmpliconSuite
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  1. AmpliconSuite/AmpliconSuite-pipeline AmpliconSuite/AmpliconSuite-pipeline Public

    A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

    Python 51 25

  2. AmpliconSuite/CycleViz AmpliconSuite/CycleViz Public

    Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.

    Python 20 6

  3. ReactionDiffusionSimulator ReactionDiffusionSimulator Public

    Simulate and visualize reaction-diffusion models and Turing patterns

    Python 16 1

  4. AmpliconSuite/AmpliconClassifier AmpliconSuite/AmpliconClassifier Public

    Classify output of AmpliconArchitect to detect types of focal amplifications present

    Python 14 11

  5. AmpliconSuite/CoRAL AmpliconSuite/CoRAL Public

    Complete Reconstruction of Amplifications with Long reads

    Python 9 2

  6. AmpliconSuite/AmpliconArchitect AmpliconSuite/AmpliconArchitect Public

    Forked from virajbdeshpande/AmpliconArchitect

    Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.

    Python 8 11