Skip to content

Issues: kharchenkolab/numbat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
0 Open 110 Closed
0 Open 110 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

reorder cell order in heatmap output
#192 by patelgrp was closed Jun 4, 2024
2
Numbat assigned clone coloring in Panel.png
#191 by quail768 was closed May 30, 2024
Input only the gene expression matrix
#187 by Moey-git was closed Apr 28, 2024
2
Excluding segs_loh causes multiple CNV states for the same segment tofix
#183 by teng-gao was closed May 3, 2024
2
Better error handling when one of the pileup fails
#179 by teng-gao was closed Mar 21, 2024
Error in mutate(., state = run_allele_hmm ... Not a matrix
#177 by whitneyt1 was closed Apr 5, 2024
2
Running numbat in multiple samples from same patient
#176 by ccruizm was closed Apr 15, 2024
1
How to generate the plotEmbedding in a numbat object?
#168 by christophechu was closed May 3, 2024
1
Error in mutate(): ℹ In argument: snp_index = 1:n(). Caused by error: ! snp_index must be size 0 or 1, not 2.
#167 by cathalgking was closed Apr 5, 2024
8
Error in find_common_diploid(bulks, gamma = gamma, alpha = alpha, ncores = ncores) : Error in smooth_segs(., min_genes = min_genes) :
#163 by whitneyt1 was closed Apr 5, 2024
6
Overwrite identifiers
#156 by SollyBunny was closed Jan 18, 2024
1
Cell Ranger Count Default Intronic Counting Impact
#155 by DarioS was closed Jan 21, 2024
1
cnv_state Column Description is Vague
#152 by DarioS was closed Jan 21, 2024
4
WASHU MM study Bioproject data not available
#149 by juniajvs was closed Nov 15, 2023
1
High ploidy cell lines
#144 by thomasveith was closed Jan 21, 2024
5
Troubleshoot Error - missing files in output directory
#141 by RaghadShu was closed Oct 6, 2023
1
Why is there so much LoH in the mouse data tutorial?
#139 by thomasveith was closed Oct 26, 2023
3
Issue about Interpretation of Results of the section Tumor phylogeny
#135 by sunshine1126 was closed Aug 11, 2023
2
No CNVs detected for tumor data
#134 by SirKuikka was closed Aug 15, 2023
4
analyse multiple samples from the same individual together to increase power
#129 by rosaranli was closed Jun 22, 2023
7
copynumber::pcf execution
#126 by wyt14 was closed May 29, 2023
1
Which CNV_state to use from the output?
#124 by aelhossiny was closed May 23, 2023
1
error when running numbat::preprocess_allele in pileup_and_phase.R
#123 by rosaranli was closed Jun 6, 2023
2
Error in mutate() while running numbat with snRNAseq data generated by Takara SMART-Seq Stranded Kit
#122 by xiaoxinchen2022 was closed Jun 10, 2023
3
Does Numbat filter cells out during giving posterior probabilities on single-cell level?
#120 by aelhossiny was closed May 9, 2023
1
ProTip! no:milestone will show everything without a milestone.