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Issues list

replace bedr in preprocess_allele
#3 by teng-gao was closed Dec 27, 2021
Too many color legend being shown
#4 by teng-gao was closed Dec 26, 2021
pileup_and_phase.R warnings
#21 by teng-gao was closed Apr 13, 2022
Majority of cells predicted as tumor cells
#59 by petrsh was closed Nov 18, 2022
Error: ! Can't subset .data outside of a data mask context.
#64 by shenglinmei was closed Nov 23, 2022
1 normal cell still generates error bug Something isn't working
#65 by teng-gao was closed Nov 28, 2022
[warning] attributes are not identical across measure variables; they will be dropped
#66 by teng-gao was closed Nov 28, 2022
pileup_and_phase error, no allele dataframe produced bug Something isn't working
#67 by teng-gao was closed Nov 28, 2022
Not enough y observations bug Something isn't working
#82 by teng-gao was closed Dec 26, 2022
plot_phylo_heatmap error
#89 by teng-gao was closed Jan 7, 2023
Better error handling when one of the pileup fails
#179 by teng-gao was closed Mar 21, 2024
Numbat assigned clone coloring in Panel.png
#191 by quail768 was closed May 30, 2024
error with genotype function
#19 by amr15 was closed Mar 19, 2022
1
Use of smart-seq input enhancement New feature or request
#22 by whtns was closed Nov 30, 2022
1
Issue during detect_clonal_loh()
#46 by Thapeachydude was closed Oct 10, 2022
1
Compatibility with Probe based chemistry
#48 by afvallejo was closed Oct 13, 2022
1
Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 't': subscript out of bounds
#56 by ChengHsiangLu was closed Nov 8, 2022
1
Barcodes pileup_and_phase
#57 by petrsh was closed Nov 9, 2022
1
Phasing failed with smartseq input.
#61 by wangsky137 was closed Nov 18, 2022
1
Error in using external annotation in plot_phylo_heatmap
#72 by wangsky137 was closed Apr 4, 2023
1
Error in h(simpleError(msg, call)) :
#73 by zqingyuan was closed Mar 8, 2023
1
when submit pileup_and_phase.R in docker it says[E::check_args] '/Users/sample_alignments.bam' does not exist.
#75 by yintz was closed Dec 7, 2022
1
Fail to draw main result figure: C stack usage error
#79 by kokonech was closed Dec 19, 2022
1
ape 5.6-4 causes problems in phylogeny bug Something isn't working
#86 by teng-gao was closed Jan 4, 2023
1
No CNV remains after filtering by LLR in pseudobulks. Consider reducing min_LLR
#91 by laijen000 was closed Jan 10, 2023
1
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