Skip to content

Issues: kharchenkolab/numbat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
61 Open 111 Closed
61 Open 111 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error during pileup_and_phase.R - barcodes not identified
#77 by sbamopoulos was closed Jan 13, 2023
10
Ferocious memory usage
#23 by cartographerJ was closed Mar 22, 2022
10
Error in arrange():
#63 by wangsky137 was closed Nov 29, 2022
9
Error during 2. Iteration [multiplexing]
#49 by Thapeachydude was closed Nov 15, 2022
9
Error in mutate(): ℹ In argument: snp_index = 1:n(). Caused by error: ! snp_index must be size 0 or 1, not 2.
#167 by cathalgking was closed Apr 5, 2024
8
No CNV remains after filtering - terminating.
#74 by tinakeshav was closed Dec 21, 2022
8
Mutate error at "Creating VCFs" stage of pileup_and_phase.R
#71 by AndyBlake was closed Nov 30, 2022
8
run_numbat seems to freeze after starting iteration 1
#20 by liviuspenter was closed Aug 24, 2022
8
analyse multiple samples from the same individual together to increase power
#129 by rosaranli was closed Jun 22, 2023
7
Error in mutate(., state = run_joint_hmm(pAD = pAD, DP = DP, p_s = p_s,
#112 by pcream was closed Apr 20, 2023
7
Error with "diploid_chroms"
#81 by Romeo1-1 was closed Apr 2, 2023
7
Error: Must group by variables found in .data. * Column seg is not found. * Column sample is not found. When analyzing two samples bound together
#33 by josegarciamanteiga was closed Jul 5, 2022
7
Error - 'X' is not a dendrogram when running Numbat example dataset
#18 by sunjh22 was closed Feb 23, 2022
7
Error in find_common_diploid(bulks, gamma = gamma, alpha = alpha, ncores = ncores) : Error in smooth_segs(., min_genes = min_genes) :
#163 by whitneyt1 was closed Apr 5, 2024
6
Error: C stack usage 7970628 is too close to the limit
#30 by aranham was closed Apr 23, 2022
6
Error caused by retest_cnv() function
#26 by WalterMuskovic was closed Apr 3, 2022
6
Run_numbat unable to successfully get through more than one iteration (no clone_post_x.tsv file generated)
#24 by amr15 was closed May 10, 2022
6
High ploidy cell lines
#144 by thomasveith was closed Jan 21, 2024
5
Tibble columns issue
#92 by cbwang3 was closed Feb 14, 2023
5
No CNV remains after filtering
#58 by petrsh was closed Nov 18, 2022
5
long vectors not supported yet
#32 by josegarciamanteiga was closed May 17, 2022
5
Error during the update tree step
#27 by aranham was closed Apr 15, 2022
5
cnv_state Column Description is Vague
#152 by DarioS was closed Jan 21, 2024
4
No CNVs detected for tumor data
#134 by SirKuikka was closed Aug 15, 2023
4
Error in optim(fn = function(w) {: non-finite value supplied by optim
#110 by ccruizm was closed Apr 4, 2023
4
ProTip! no:milestone will show everything without a milestone.