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Issues list

plot_phylo_heatmap() does not work
#195 opened Jul 5, 2024 by kobolock updated Jul 9, 2024
run_numbat() error unclear
#181 opened Apr 5, 2024 by cathalgking updated Jul 4, 2024
5
Comparison to pseudobulk and sanity check of high major copy number documentation Improvements or additions to documentation
#194 opened Jul 1, 2024 by Nikki-Burdett updated Jul 2, 2024
6
Probabilities of each CNV state are missing in joint_post_2.tsv fixed Fixed in upcoming version
#146 opened Nov 1, 2023 by hxj5 updated Jul 2, 2024
5
Subtrees disappear bug Something isn't working fixed Fixed in upcoming version
#150 opened Nov 29, 2023 by acalcino updated Jul 1, 2024
7
n_states is 0 for CNV region with multiallelic CNVs are not called fixed Fixed in upcoming version
#178 opened Mar 16, 2024 by teng-gao updated Jul 1, 2024
@teng-gao
CNV calling from 10X 5 prime GEX data
#193 opened Jun 14, 2024 by cv55 updated Jun 15, 2024
1
bulk_clones plot "CNV state" legend colors
#182 opened Apr 9, 2024 by igordot updated Jun 5, 2024
5
Error because of dplyr version
#189 opened May 15, 2024 by KatharinaSchmid updated Jun 4, 2024
1
Error: 'separate_longer_delim' is not an exported object from 'namespace:tidyr'
#190 opened May 24, 2024 by fahmadimoughari updated Jun 4, 2024
2
error in evaluating the argument 'subject' in selecting a method for function 'findOverlaps': 'seqnames' cannot contain NAs
#165 opened Feb 17, 2024 by yulijia updated May 25, 2024
5
segfault, caught bus error, non-existent physical address
#188 opened May 13, 2024 by ahwanpandey updated May 20, 2024
6
plot_phylo_heatmap
#170 opened Feb 28, 2024 by Moey-git updated May 3, 2024
1
gexp_roll_wide
#169 opened Feb 28, 2024 by Moey-git updated May 3, 2024
1
Fail during numbat : object 'seg' not found
#186 opened Apr 21, 2024 by sxf-ux updated Apr 21, 2024
saving numbat object after changing n_cut=k kvalue
#185 opened Apr 16, 2024 by whitneyt1 updated Apr 16, 2024
Duplicated segments in segs_consensus for NCI-N87 tofix
#184 opened Apr 12, 2024 by teng-gao updated Apr 12, 2024
Error in if (UPGMA_score > NJ_score) bug Something isn't working
#68 opened Nov 28, 2022 by teng-gao updated Apr 11, 2024
12
No SNPs left
#180 opened Mar 18, 2024 by xiaoshanpai updated Mar 18, 2024
1
How to re-run from the breakpoint enhancement New feature or request
#131 opened Jun 29, 2023 by daisyyr updated Mar 16, 2024
3
Account for WGD enhancement New feature or request
#36 opened May 30, 2022 by teng-gao updated Mar 12, 2024
3
How to use numbat in other species with a phased genome? enhancement New feature or request
#174 opened Mar 9, 2024 by xinghua1001 updated Mar 12, 2024
3
Chromosome Arms Summaries File Lacking
#175 opened Mar 10, 2024 by DarioS updated Mar 10, 2024
why genotype1 have tumor cells?
#172 opened Mar 3, 2024 by BioAmelie updated Mar 7, 2024
1
High Similarity of Clones' Profiles
#173 opened Mar 4, 2024 by DarioS updated Mar 4, 2024
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