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Issues list

sam file format error bug Something isn't working
#3 by jianshu93 was closed Nov 30, 2021 updated Nov 30, 2021
10
Fasta accession modification feature New feature or request
#4 by ksahlin was closed Dec 27, 2021 updated Dec 27, 2021
4
avx512 support documentation Improvements or additions to documentation
#6 by jianshu93 was closed Dec 30, 2021 updated Dec 30, 2021
2
CMake compilation supported?
#11 by sjaenick was closed Feb 16, 2022 updated Feb 16, 2022
3
Make alignment scoring available as parameters feature New feature or request
#10 by ksahlin was closed Feb 16, 2022 updated Feb 16, 2022
1
Strategies for mutltimapping reads feature New feature or request
#8 by sebgra was closed Feb 16, 2022 updated Feb 16, 2022
6
pipe output to downstream programs feature New feature or request
#9 by TDDB-limagrain was closed Feb 16, 2022 updated Feb 16, 2022
30
terminate called after throwing an instance of 'std::out_of_range'
#16 by TDDB-limagrain was closed Feb 23, 2022 updated Feb 23, 2022
8
-r option feature New feature or request
#19 by sjaenick was closed Apr 1, 2022 updated Apr 1, 2022
2
ALIGNMENT TO REF LONGER THAN 2000bp
#17 by TDDB-limagrain was closed Apr 1, 2022 updated Apr 5, 2022
12
bam file header not compatible with GATK
#22 by danessel was closed Apr 17, 2022 updated Apr 19, 2022
11
suggestion to align medium size indel
#1 by husamia was closed Jun 1, 2022 updated Jun 1, 2022
14
Change license to MIT
#29 by marcelm was closed Jun 2, 2022 updated Jun 2, 2022
1
looking forward to use it, any chance you can make it available via Conda? feature New feature or request high priority Extra attention is needed
#7 by AntonioBaeza was closed Jun 6, 2022 updated Jun 6, 2022
6
Illegal instruction ?
#34 by AntonioBaeza was closed Aug 17, 2022 updated Aug 17, 2022
1
9
Replace some asserts with proper error handling
#44 by marcelm was closed Sep 8, 2022 updated Sep 8, 2022
1
1
Create classes that represent SAM files and records
#58 by marcelm was closed Sep 9, 2022 updated Sep 9, 2022
8
Add unit tests (using a unit testing framework)
#49 by marcelm was closed Sep 14, 2022 updated Sep 14, 2022
Unmappable reads lose their qualities in SAM output
#56 by marcelm was closed Sep 14, 2022 updated Sep 14, 2022
1
Structure of index.cpp
#83 by marcelm was closed Oct 11, 2022 updated Oct 11, 2022
1
1
OSx compilation with cmake
#102 by ksahlin was closed Oct 24, 2022 updated Oct 24, 2022
1
4
Conda installation on Mac OSx
#105 by ksahlin was closed Oct 24, 2022 updated Oct 25, 2022
6
Parameter types in usage documentation
#108 by ksahlin was closed Oct 27, 2022 updated Oct 27, 2022
Segmentation fault when reference FASTA does not exist or has wrong format bug Something isn't working
#28 by marcelm was closed Oct 29, 2022 updated Oct 29, 2022
Possibly add an IndexCreationStatistics struct
#95 by marcelm was closed Oct 31, 2022 updated Oct 31, 2022
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