Source code to accompany Lancet Paper, Nyberg, Ferguson et al, March 2022

Code repository for the manuscript: 'Assessing performance in prediction models with survival outcomes: practical guidance' (manuscript in preparation)

Growth Curve Analysis

use htmltools in R to do the Facebook React Tutorial

Code accompanying the book "Machine Learning for Hackers"

Shiny App for Repeated Measurements Course

2-day workshop on Generalized Linear Mixed-Effects Modeling in R

Nowcasting the number of new symptomatic cases during infectious disease outbreaks using constrained P-spline smoothing

Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.

An Introduction to Spatial Analysis using INLA

Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases

Tutorial for useR2019

Development of various support R code snippets and packages for use for analysis and modelling purposes.

Flexible Imputation of Missing Data - bookdown source

R code and documentation to estimate case fatality ratio of 2019-nCoV from cases outside China

Applies algorithm by Ypma et al. (2013) to detect clusters in surveillance data

Nowcasting by Bayesian Smoothing

Flexible Markov chain monte carlo via reparameterization

R Package for individual based epidemiological models

Repository for all scripts required to replicate the CFR analysis for paper submission.

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

Bayesian Data Analysis course at Aalto