Knee point detection in Python 📈

Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.

CLI to automate Nextflow pipeline testing

A Python package for General Graphical Lasso computation

Compilation of files associated with Heidrich et al. (2023)

QIIME 2 plugin for machine learning prediction of sample data.

Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022

Applying umap to microbiome data via QIIME2

A Zotero plugin for syncing items and notes into Notion

Nagini is a static verifier for Python 3, based on the Viper verification infrastructure.

Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

QIIME 2 plugin supporting taxonomic classification

A flexible pipeline for complete analysis of bacterial genomes

Collection of bioinformatics training materials

QIIME 2 Provenance Replay Tools

Differential expression of RNA-seq data using the Negative Binomial

A skeleton for QIIME 2 plugins

A library of free open source icons for science illustrations in biology and chemistry

JupyterBook for QIIME 2 FAES January 2022 workshop

resources for faculty

Official repository for the QIIME 2 framework.

Melbourne Bioinformatics documentation in markdown format

The package that sounds as it is called.

Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Toolkit for processing sequences in FASTA/Q formats

Nextflow Tower system