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Flinders University
- Adelaide, Australia
- http://edwards.flinders.edu.au/
- @linsalrob
- @linsalrob@genomic.social
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ComputationalGenomicsManual Public
Robs manual for the computational genomics and bioinformatics class.
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PawseySummer2024 Public
Code and ideas for the Pawsey summer internship 2024, designing CNNs for segmented viruses
MIT License UpdatedJun 24, 2024 -
pawsey Public
Code for running lots of different things on pawsey. This is a bit of a generic bucket and some of the code will be duplicated elsewhere in different projects
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EdwardsLab Public
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
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repeatfinder Public
fast code for searching for direct and indirect repeats in DNA sequences.
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sphae Public
Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
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hecatomb Public
Forked from shandley/hecatombhecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Python MIT License UpdatedJun 6, 2024 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJun 4, 2024 -
hecatomb-documentation Public
Forked from beardymcjohnface/hecatomb-documentationDocumentation for Hecatomb (https://github.com/shandley/hecatomb)
MIT License UpdatedJun 3, 2024 -
fastq-pair Public
Match up paired end fastq files quickly and efficiently.
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atavide_lite Public
A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings maybe specific for our compute resources
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get_orfs Public
C code to translate a DNA sequence using different translation tables. Designed to be fast and lightweight, with few dependencies (only zlib and pthreads)
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SUPER-FOCUS Public
Forked from metageni/SUPER-FOCUSA tool for agile functional analysis of shotgun metagenomic data
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Koverage Public
Forked from beardymcjohnface/KoverageQuickly get coverage statistics given reads and an assembly
Python MIT License UpdatedMay 9, 2024 -
genetic_codes Public
Python code for translating sequences using different NCBI translation tables and genetic codes.
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alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold.
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phables Public
Forked from Vini2/phables🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
Python MIT License UpdatedApr 18, 2024 -
reneo Public
Forked from Vini2/reneo🦠🧬 Unraveling Viral Genomes from Metagenomes
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PhiSpy Public
Prediction of prophages from bacterial genomes
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prodigal-gv Public
Forked from apcamargo/prodigal-gvA fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
C GNU General Public License v3.0 UpdatedOct 12, 2023 -
genbank_to Public
Convert genbank files to a swath of other formats
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acacia-stream Public
testing some streaming using minimap and acacia and something
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pacer-hackathon-2023 Public
Forked from PawseySC/pacer-hackathon-2023PaCER Hackathon 2023 documentation and attendee guide
UpdatedSep 19, 2023 -
fast-adapter-trimming Public
Quickly remove adapters from DNA sequence files
C MIT License UpdatedJun 20, 2023 -
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atavide Public
Atavistic processing of metagenomics data.
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primer-trimming Public
Fast C code for identifying and removing primers and adapters
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adapter_benchmark Public
Forked from boulund/adapter_benchmarkBenchmarking adapter and quality trimming tools
Python MIT License UpdatedMay 3, 2023