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danfojs Public
Forked from javascriptdata/danfojsDanfo.js is an open source, JavaScript library providing high performance, intuitive, and easy to use data structures for manipulating and processing structured data.
TypeScript MIT License UpdatedMay 20, 2024 -
Jandas Public
Forked from frlender/JandasA very much Pandas-like JavaScript library for data science
TypeScript ISC License UpdatedMay 20, 2024 -
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DESeq2 Public
Forked from thelovelab/DESeq2Differential expression of RNA-seq data using the Negative Binomial
R UpdatedJan 7, 2024 -
CellChatv2 Public
Forked from jinworks/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
R GNU General Public License v3.0 UpdatedJan 6, 2024 -
CellChat Public
Forked from sqjin/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R GNU General Public License v3.0 UpdatedJan 6, 2024 -
biomaRt Public
Forked from grimbough/biomaRtR package providing query functionality to BioMart instances like Ensembl
R UpdatedDec 29, 2023 -
rhdf5filters Public
Forked from grimbough/rhdf5filtersDistributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.
C BSD 2-Clause "Simplified" License UpdatedDec 27, 2023 -
Rhdf5lib Public
Forked from grimbough/Rhdf5libDistribution of the HDF5 library in an R package
R UpdatedDec 27, 2023 -
rhdf5 Public
Forked from grimbough/rhdf5Package providing an interface between HDF5 and R
R UpdatedDec 27, 2023 -
seurat-disk Public
Forked from mojaveazure/seurat-diskInterfaces for HDF5-based Single Cell File Formats
R GNU General Public License v3.0 UpdatedDec 27, 2023 -
BPCells Public
Forked from bnprks/BPCellsScaling Single Cell Analysis to Millions of Cells
C Other UpdatedDec 23, 2023 -
anndataR Public
Forked from scverse/anndataRAnnData interoperability in R
R Other UpdatedDec 10, 2023 -
ComplexHeatmap Public
Forked from jokergoo/ComplexHeatmapMake Complex Heatmaps
R Other UpdatedDec 10, 2023 -
harmony-pytorch Public
Forked from lilab-bcb/harmony-pytorchPython BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2023 -
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sentence-transformers Public
Forked from UKPLab/sentence-transformersMultilingual Sentence & Image Embeddings with BERT
Python Apache License 2.0 UpdatedNov 20, 2023 -
OnClass Public
Forked from wangshenguiuc/OnClassSingle cell typing based on cell ontology
Python MIT License UpdatedNov 20, 2023 -
alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold.
Python Apache License 2.0 UpdatedOct 26, 2023 -
conda-pack Public
Forked from conda/conda-packPackage conda environments for redistribution
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awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedAug 3, 2023 -
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slingshot Public
Forked from kstreet13/slingshotFunctions for identifying and characterizing continuous developmental trajectories in single-cell data.
R UpdatedJul 11, 2023 -
AUCell Public
Forked from aertslab/AUCellAUCell: score single cells with gene regulatory networks
R UpdatedJul 8, 2023 -
SCENIC Public
Forked from aertslab/SCENICSCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
HTML Other UpdatedJul 8, 2023 -
packcircles Public
Forked from mbedward/packcirclesR package for circle packing
C++ Other UpdatedJul 7, 2023 -
MERINGUE Public
Forked from JEFworks-Lab/MERINGUEcharacterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
R GNU General Public License v3.0 UpdatedJul 5, 2023 -
TFBSTools Public
Forked from ge11232002/TFBSToolsSoftware Package for Transcription Factor Binding Site (TFBS) Analysis
R UpdatedJul 5, 2023