Update MEME to 5.5.2 (bioconda#40495)

* Update MEME to 5.5.2 * remove noarch build * nodejs back to build requirements
linzhi2013 · Apr 18, 2023 · 95ce3d8 · 95ce3d8
1 parent a8d667d
commit 95ce3d8
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Showing 2 changed files with 17 additions and 16 deletions.
diff --git a/recipes/meme/build.sh b/recipes/meme/build.sh
@@ -1,14 +1,14 @@
-#!/bin/bash
+#!/bin/sh
 set -e
 MEME_ETC_DIR=${PREFIX}/etc
 #HOME=/tmp cpanm CGI::Application
 #HOME=/tmp cpanm XML::Parser::Expat --configure-args "EXPATLIBPATH=$PREFIX/lib" --configure-args "EXPATHINCPATH=$PREFIX/include"
 perl scripts/dependencies.pl
 
-./configure --prefix="$PREFIX"
+./configure --prefix="${PREFIX}" --enable-build-libxml2 --enable-build-libxslt CC=${CC}
 
 make clean
-make AM_CFLAGS='-DNAN="(0.0/0.0)"'
+make CC=${CC} AM_CFLAGS='-DNAN="(0.0/0.0)"'
 
 # tests will only work inside the build dir, but
 # https://github.com/conda/conda-build/issues/1453

diff --git a/recipes/meme/meta.yaml b/recipes/meme/meta.yaml
@@ -1,34 +1,36 @@
 {% set name = "MEME" %}
-{% set version = "5.4.1" %}
+{% set version = "5.5.2" %}
+{% set sha256 = "340644438dac7584895ecffafa8c1fb7de57c705a34045c1ea1bde785bab05a3" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: http://meme-suite.org/meme-software/{{ version }}/meme-{{ version }}.tar.gz
-  sha256: c07fb8afafa60fc5e84ca24493c82fa6f4bd1df1a2622102edbf86a1c30fd11f
+  url: https://meme-suite.org/meme/meme-software/{{ version }}/meme-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
 
 build:
-  number: 2
+  number: 0
   detect_binary_files_with_prefix: True
 
 requirements:
   build:
     - make
     - {{ compiler('c') }}
-    - nodejs
+    - nodejs >=16.4.1
   host:
+    - openmpi
     - yaml
     - icu
     - python
-    - perl
     - ghostscript
     - zlib
     - xz
     - libxslt
     - libxml2
     - expat
+    - perl
     - perl-xml-parser
     - perl-app-cpanminus
     - perl-module-build
@@ -42,15 +44,14 @@ requirements:
     - perl-log-log4perl
     - perl-json
     - perl-file-which
-    - openmpi
+    - perl-sys-info
   run:
+    - openmpi
     - yaml
     - icu
     - expat
     - python
     - perl
-    - zlib
-    - xz
     - libxslt
     - libxml2
     - ghostscript
@@ -65,7 +66,7 @@ requirements:
     - perl-log-log4perl
     - perl-json
     - perl-file-which
-    - openmpi
+    - perl-sys-info
 
 test:
   commands:
@@ -76,7 +77,7 @@ test:
     - glam2 -version
     - tomtom -version
     - centrimo -version
-    - ame --version 2>&1 | grep -i usage
+    - ame 2>&1 | grep -i usage
     - spamo -version
     - gomo -version
     - fimo -version
@@ -88,10 +89,10 @@ test:
     - dreme -version
 
 about:
-  home: http://meme-suite.org
+  home: https://meme-suite.org
   license: Custom
   license_file: COPYING
-  summary: Motif based sequence Analysis tools
+  summary: Motif-based sequence analysis tools
 
 extra:
   container: