html

docs/argo_build.html

@@ -80,8 +80,8 @@ <h4>
 general_profiles(argo,<span class="pl-s"><span class="pl-pds">'</span>TEMP_ADJUSTED<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>depth<span class="pl-pds">'</span></span>)
 general_map(argo,bathymetry_dir,<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88301724-fd1dab80-ccd2-11ea-9ea7-7badf1424865.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88301724-fd1dab80-ccd2-11ea-9ea7-7badf1424865.png" width="600" style="max-width:100%;"></a></p>
-<p><a href="https://user-images.githubusercontent.com/24570061/88301788-11fa3f00-ccd3-11ea-9cdf-1622f701bfe9.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88301788-11fa3f00-ccd3-11ea-9cdf-1622f701bfe9.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_build1.png" target="_blank" rel="nofollow"><img src="png/argo_build1.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_build2.png" target="_blank" rel="nofollow"><img src="png/argo_build2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/argo_platform_map.html

@@ -73,7 +73,7 @@ <h4>
 argo_platform_map(argo,annotate) <span class="pl-c"><span class="pl-c">%</span> annotate optional,  1=on 0=off</span>
 bathymetry_plot(bathymetry_extract(bathymetry_dir,bounding_region(argo)),<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88316847-6955da80-cce6-11ea-8bb0-d9d0523a3a29.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88316847-6955da80-cce6-11ea-8bb0-d9d0523a3a29.png" width="700" style="max-width:100%;"></a></p>
+<p><a href="png/argo_platform_map1.png" target="_blank" rel="nofollow"><img src="png/argo_platform_map1.png" width="700" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/argo_platform_subset.html

@@ -55,7 +55,7 @@ <h4>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Plot locations of Argo profiles:</span>
 argo_platform_map(argo,<span class="pl-c1">1</span>)
 bathymetry_plot(bathymetry_extract(bathymetry_dir,bounding_region(argo)),<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>)</pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88316847-6955da80-cce6-11ea-8bb0-d9d0523a3a29.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88316847-6955da80-cce6-11ea-8bb0-d9d0523a3a29.png" width="700" style="max-width:100%;"></a></p>
+<p><a href="png/argo_platform_subset1.png" target="_blank" rel="nofollow"><img src="png/argo_platform_subset1.png" width="700" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Subset by platform:</span>
 
 platform_id = <span class="pl-c1">5904421</span>;
@@ -66,7 +66,7 @@ <h4>
 argo_platform_map(subargo,<span class="pl-c1">1</span>)
 bathymetry_plot(bathymetry_extract(bathymetry_dir,bounding_region(argo)),<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88324607-ec306280-ccf1-11ea-8f9a-81320046ccf4.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88324607-ec306280-ccf1-11ea-8f9a-81320046ccf4.png" width="700" style="max-width:100%;"></a></p>
+<p><a href="png/argo_platform_subset2.png" target="_blank" rel="nofollow"><img src="png/argo_platform_subset2.png" width="700" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/argo_profiles.html

@@ -74,13 +74,13 @@ <h4>
 annotate = <span class="pl-c1">1</span>;
 argo_profiles(argo,variable,annotate) <span class="pl-c"><span class="pl-c">%</span> annotate optional,  1=on 0=off</span>
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88327048-b04acc80-ccf4-11ea-8e1d-4ae00634953c.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88327048-b04acc80-ccf4-11ea-8e1d-4ae00634953c.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_profiles1.png" target="_blank" rel="nofollow"><img src="png/argo_profiles1.png" width="600" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Map profiles with annotations:</span>
 
 annotate = <span class="pl-c1">1</span>;
 argo_profiles_map(argo,annotate) <span class="pl-c"><span class="pl-c">%</span> annotate optional,  1=on 0=off</span>
 bathymetry_plot(bathymetry_extract(bathymetry_dir,bounding_region(argo)),<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>) <span class="pl-c"><span class="pl-c">%</span> add bathymetry contours</span></pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88327053-b2149000-ccf4-11ea-8d1d-c0493bf9ef43.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88327053-b2149000-ccf4-11ea-8d1d-c0493bf9ef43.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_profiles2.png" target="_blank" rel="nofollow"><img src="png/argo_profiles2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/argo_profiles_map.html

@@ -73,13 +73,13 @@ <h4>
 annotate = <span class="pl-c1">1</span>;
 argo_profiles(argo,variable,annotate) <span class="pl-c"><span class="pl-c">%</span> annotate optional,  1=on 0=off</span>
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88327048-b04acc80-ccf4-11ea-8e1d-4ae00634953c.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88327048-b04acc80-ccf4-11ea-8e1d-4ae00634953c.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_profiles_map1.png" target="_blank" rel="nofollow"><img src="png/argo_profiles_map1.png" width="600" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Map profiles with annotations:</span>
 
 annotate = <span class="pl-c1">1</span>;
 argo_profiles_map(argo,annotate) <span class="pl-c"><span class="pl-c">%</span> annotate optional,  1=on 0=off</span>
 bathymetry_plot(bathymetry_extract(bathymetry_dir,bounding_region(argo)),<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>) <span class="pl-c"><span class="pl-c">%</span> add bathymetry contours</span></pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88327053-b2149000-ccf4-11ea-8d1d-c0493bf9ef43.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88327053-b2149000-ccf4-11ea-8d1d-c0493bf9ef43.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/argo_profiles_map2.png" target="_blank" rel="nofollow"><img src="png/argo_profiles_map2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/bathymetry_plot.html

@@ -71,7 +71,7 @@ <h4>
 bathymetry_plot(bathy,<span class="pl-s"><span class="pl-pds">'</span>3Dsurf<span class="pl-pds">'</span></span>)
 caxis([<span class="pl-c1">0</span> <span class="pl-c1">1</span>])
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88409944-ab912180-cda3-11ea-84bc-f848a4f795bc.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88409944-ab912180-cda3-11ea-84bc-f848a4f795bc.png" width="700" style="max-width:100%;"></a></p>
+<p><a href="png/bathymetry_plot1.png" target="_blank" rel="nofollow"><img src="png/bathymetry_plot1.png" width="700" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/bathymetry_section.html

@@ -64,7 +64,7 @@ <h4>
 filled = <span class="pl-c1">1</span>;
 [bathy] = bathymetry_extract(bathymetry_dir,bounding_region(cruise));
 bathymetry_section(bathy,xcoords,ycoords,xref,filled)</pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88436173-b8c50500-cdd1-11ea-8270-22930d42843c.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88436173-b8c50500-cdd1-11ea-8270-22930d42843c.png" width="800" style="max-width:100%;"></a></p>
+<p><a href="png/bathymetry_section1.png" target="_blank" rel="nofollow"><img src="png/bathymetry_section1.png" width="800" style="max-width:100%;"></a></p>
 <h4>
 <a id="user-content-example-2" class="anchor" href="#example-2" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Example 2</h4>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Plot bathymetry nearest to a list of coordinates. Use latitude as the x-axis:</span>

docs/bounding_region.html

@@ -69,7 +69,7 @@ <h4>
 <span class="pl-c"><span class="pl-c">%</span> Add bathymetry contours:</span>
 
 bathymetry_plot(bathy,region,<span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>)</pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88435475-430c6980-cdd0-11ea-9fa8-417bf9b71583.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88435475-430c6980-cdd0-11ea-9fa8-417bf9b71583.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/bounding_region1.png" target="_blank" rel="nofollow"><img src="png/bounding_region1.png" width="600" style="max-width:100%;"></a></p>
 <h4>
 <a id="user-content-example-2" class="anchor" href="#example-2" aria-hidden="true"><span aria-hidden="true" class="octicon octicon-link"></span></a>Example 2</h4>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Find the region around a list of coordinates (to be later used with bathymetry_section):</span>

docs/general_depth_subset.html

@@ -58,13 +58,13 @@ <h4>
 [hycom] =  model_build_profiles(source,date,variable_list,xcoords,ycoords,zgrid);
 general_section(hycom,<span class="pl-s"><span class="pl-pds">'</span>water_temp<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>lat<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>depth<span class="pl-pds">'</span></span>,<span class="pl-c1">1</span>,<span class="pl-c1">1</span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88417509-0892d480-cdb0-11ea-9685-0da4b82f99f4.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88417509-0892d480-cdb0-11ea-9685-0da4b82f99f4.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_depth_subset1.png" target="_blank" rel="nofollow"><img src="png/general_depth_subset1.png" width="600" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Subset to upper 450 meters and replot the temperature section:</span>
 
 [hycom] =  general_depth_subset(hycom,[-<span class="pl-c1">450</span> <span class="pl-c1">0</span>]);
 general_section(hycom,<span class="pl-s"><span class="pl-pds">'</span>water_temp<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>lat<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>depth<span class="pl-pds">'</span></span>,<span class="pl-c1">1</span>,<span class="pl-c1">1</span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88417524-10527900-cdb0-11ea-8a5c-b8c6607a2386.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88417524-10527900-cdb0-11ea-8a5c-b8c6607a2386.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_depth_subset2.png" target="_blank" rel="nofollow"><img src="png/general_depth_subset2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/general_map.html

@@ -76,7 +76,7 @@ <h4>
 ptype = <span class="pl-s"><span class="pl-pds">'</span>2Dcontour<span class="pl-pds">'</span></span>; <span class="pl-c"><span class="pl-c">%</span> '2Dscatter' '2Dcontour'</span>
 general_map(argo,bathymetry_dir,ptype) <span class="pl-c"><span class="pl-c">%</span> bathymetry_dir, ptype optional</span>
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88301724-fd1dab80-ccd2-11ea-9ea7-7badf1424865.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88301724-fd1dab80-ccd2-11ea-9ea7-7badf1424865.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_map1.png" target="_blank" rel="nofollow"><img src="png/general_map1.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/general_profiles.html

@@ -68,7 +68,7 @@ <h4>
 zref = <span class="pl-s"><span class="pl-pds">'</span>depth<span class="pl-pds">'</span></span>; <span class="pl-c"><span class="pl-c">%</span> see particular struct for options</span>
 general_profiles(object,variable,zref)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88301788-11fa3f00-ccd3-11ea-9cdf-1622f701bfe9.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88301788-11fa3f00-ccd3-11ea-9cdf-1622f701bfe9.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_profiles1.png" target="_blank" rel="nofollow"><img src="png/general_profiles1.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/general_region_subset.html

@@ -73,13 +73,13 @@ <h4>
 general_map(argo,bathymetry_dir)
 [xcoords,ycoords] = region_select(); <span class="pl-c"><span class="pl-c">%</span> click desired  region on the figure</span>
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88415528-a684a000-cdac-11ea-8f79-189818c2351c.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88415528-a684a000-cdac-11ea-8f79-189818c2351c.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_region_subset1.png" target="_blank" rel="nofollow"><img src="png/general_region_subset1.png" width="600" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre><span class="pl-c"><span class="pl-c">%</span> Subset the struct and remap:</span>
 
 [subargo] = general_region_subset(argo,xcoords,ycoords);
 general_map(subargo,bathymetry_dir)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88416080-8e615080-cdad-11ea-8014-e245935da2cf.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88416080-8e615080-cdad-11ea-8014-e245935da2cf.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_region_subset2.png" target="_blank" rel="nofollow"><img src="png/general_region_subset2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/general_remove_duplicates.html

@@ -68,7 +68,7 @@ <h4>
 object = hycom;
 [subobject] = general_remove_duplicates(object);
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88433788-bd3aef00-cdcc-11ea-99c4-653bca43d1d0.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88433788-bd3aef00-cdcc-11ea-99c4-653bca43d1d0.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_remove_duplicates1.png" target="_blank" rel="nofollow"><img src="png/general_remove_duplicates1.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/general_section.html

@@ -72,7 +72,7 @@ <h4>
 [xcoords,ycoords] = transect_select(<span class="pl-s"><span class="pl-pds">'</span>densify<span class="pl-pds">'</span></span>,<span class="pl-c1">10</span>); <span class="pl-c"><span class="pl-c">%</span> click desired transect on the figure, densify selection by 10x </span>
 zgrid = <span class="pl-c1">1</span>; <span class="pl-c"><span class="pl-c">%</span> vertical grid for linear interpolation in meters</span>
 [mocha] = mocha_build_profiles(month,xcoords,ycoords,zgrid); <span class="pl-c"><span class="pl-c">%</span> zgrid optional, no interpolation if unspecified</span></pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88334226-73d09e00-ccff-11ea-867d-860d64744dc0.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88334226-73d09e00-ccff-11ea-867d-860d64744dc0.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_section1.png" target="_blank" rel="nofollow"><img src="png/general_section1.png" width="600" style="max-width:100%;"></a></p>
 <div class="highlight highlight-source-matlab"><pre>
 <span class="pl-c"><span class="pl-c">%</span> Make a temperature section:</span>
 
@@ -83,7 +83,7 @@ <h4>
 <span class="pl-s">interpolate = 1; % 1=on 0=off</span>
 <span class="pl-s">contours = 1; % 1=on 0=off</span>
 <span class="pl-s">general_section(object,variable,xref,zref,interpolate,contours)</span></pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/88334248-79c67f00-ccff-11ea-926b-a713efbb94d0.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/88334248-79c67f00-ccff-11ea-926b-a713efbb94d0.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/general_section2.png" target="_blank" rel="nofollow"><img src="png/general_section2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>

docs/glider_build.html

@@ -91,8 +91,8 @@ <h4>
 figure
 general_section(glider,<span class="pl-s"><span class="pl-pds">'</span>salinity<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>km<span class="pl-pds">'</span></span>,<span class="pl-s"><span class="pl-pds">'</span>pressure<span class="pl-pds">'</span></span>)
 </pre></div>
-<p><a href="https://user-images.githubusercontent.com/24570061/94057510-b66d3000-fdad-11ea-8261-c2dddbf72439.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/94057510-b66d3000-fdad-11ea-8261-c2dddbf72439.png" width="600" style="max-width:100%;"></a></p>
-<p><a href="https://user-images.githubusercontent.com/24570061/94057516-b79e5d00-fdad-11ea-85e0-3e274feff845.png" target="_blank" rel="nofollow"><img src="https://user-images.githubusercontent.com/24570061/94057516-b79e5d00-fdad-11ea-85e0-3e274feff845.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/glider_build1.png" target="_blank" rel="nofollow"><img src="png/glider_build1.png" width="600" style="max-width:100%;"></a></p>
+<p><a href="png/glider_build2.png" target="_blank" rel="nofollow"><img src="png/glider_build2.png" width="600" style="max-width:100%;"></a></p>
 
               </article>
             </div>