Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update README.md #53

Merged
merged 1 commit into from
Apr 5, 2022
Merged

Update README.md #53

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Update README.md 
clarification on sequence names.
  • Loading branch information
@maximilianh
maximilianh authored Apr 5, 2022
commit 30667e84fad0bae97bb0014c5e69245b9348bb02
2 changes: 1 addition & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ Changes from v1.1 include the addition of a finished ChrY from the <a href="http
* [chm13v2.0_maskedY.rCRS.fa.gz](https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/analysis_set/chm13v2.0_maskedY_rCRS.fa.gz): PARs on chrY hard masked to "N" and mitochodrion
replaced with rCRS (AC:NC_012920.1)

This genome is also available at [NCBI (GCA_009914755.4)](https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.4) and at [UCSC](https://genome.ucsc.edu/h/GCA_009914755.4).
This genome is also available at [NCBI (GCA_009914755.4)](https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.4) and at [UCSC](https://genome.ucsc.edu/h/GCA_009914755.4). Note that even though UCSC still shows (temporarily) the Genbank accessions as sequence names on the browser itself, it can load annotations in BED/bigBed/BAM/CRAM/bigWig and other formats using the "chr1" names.

### v1.1
<a href="https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/chm13.draft_v1.1.fasta.gz">Complete T2T reconstruction of a human genome</a>. Changes from v1.0 include filled rDNA gaps and improved polishing within telomeres. One rare heterozygous variant causing a premature stop codon was changed at chr9:134589924 to the more common allele. Also available at <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.3">NCBI</a>. Changes made from v1.0 to v1.1 are available as a [VCF](https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/changes/v1.0_to_v1.1/v1.0_patch.vcf.gz).
Expand Down